Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1829 and GFF1830 are separated by 116 nucleotides GFF1830 and GFF1831 are separated by 97 nucleotides GFF1831 and GFF1832 are separated by 248 nucleotides GFF1832 and GFF1833 are separated by 102 nucleotides
GFF1829 - Catechol-2,3-dioxygenase, at 487,533 to 488,438
GFF1829
GFF1830 - hypothetical protein, at 488,555 to 489,166
GFF1830
GFF1831 - Ethylmalonyl-CoA mutase, at 489,264 to 491,237
GFF1831
GFF1832 - hypothetical protein, at 491,486 to 491,866
GFF1832
GFF1833 - hypothetical protein, at 491,969 to 492,205
GFF1833
Position (kb) 489
490
491
492 Strain fitness (log2 ratio) -2
-1
0
1 at 488.500 kb on - strand at 488.659 kb on - strand, within GFF1830 at 488.859 kb on + strand, within GFF1830 at 488.860 kb on - strand, within GFF1830 at 488.860 kb on - strand, within GFF1830 at 488.921 kb on - strand, within GFF1830 at 489.209 kb on + strand at 489.209 kb on + strand at 489.209 kb on + strand at 489.209 kb on + strand at 489.209 kb on + strand at 489.209 kb on + strand at 489.209 kb on + strand at 489.571 kb on + strand, within GFF1831 at 489.571 kb on + strand, within GFF1831 at 490.120 kb on + strand, within GFF1831 at 490.267 kb on + strand, within GFF1831 at 490.268 kb on - strand, within GFF1831 at 490.414 kb on + strand, within GFF1831 at 490.415 kb on - strand, within GFF1831 at 490.739 kb on - strand, within GFF1831 at 490.739 kb on - strand, within GFF1831 at 490.739 kb on - strand, within GFF1831 at 490.837 kb on + strand, within GFF1831 at 490.837 kb on + strand, within GFF1831 at 490.837 kb on + strand, within GFF1831 at 490.837 kb on + strand, within GFF1831 at 490.837 kb on + strand, within GFF1831 at 490.837 kb on + strand, within GFF1831 at 490.837 kb on + strand, within GFF1831 at 490.837 kb on + strand, within GFF1831 at 490.838 kb on - strand, within GFF1831 at 490.838 kb on - strand, within GFF1831 at 490.838 kb on - strand, within GFF1831 at 490.838 kb on - strand, within GFF1831 at 490.838 kb on - strand, within GFF1831 at 490.838 kb on - strand, within GFF1831 at 490.838 kb on - strand, within GFF1831 at 490.838 kb on - strand, within GFF1831 at 490.855 kb on + strand, within GFF1831 at 490.856 kb on - strand, within GFF1831 at 490.856 kb on - strand, within GFF1831 at 490.856 kb on - strand, within GFF1831 at 490.932 kb on - strand, within GFF1831 at 490.933 kb on + strand, within GFF1831 at 490.933 kb on + strand, within GFF1831 at 491.200 kb on + strand at 491.200 kb on + strand at 491.200 kb on + strand at 491.200 kb on + strand at 491.200 kb on + strand at 491.200 kb on + strand at 491.201 kb on - strand at 491.201 kb on - strand at 491.201 kb on - strand at 491.323 kb on - strand at 491.450 kb on - strand at 491.469 kb on - strand at 491.564 kb on + strand, within GFF1832 at 491.565 kb on - strand, within GFF1832 at 491.591 kb on + strand, within GFF1832 at 491.592 kb on - strand, within GFF1832 at 491.592 kb on - strand, within GFF1832 at 491.880 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 488,500 - +0.4 488,659 - GFF1830 0.17 +1.0 488,859 + GFF1830 0.50 -0.4 488,860 - GFF1830 0.50 -0.5 488,860 - GFF1830 0.50 +0.2 488,921 - GFF1830 0.60 +0.8 489,209 + -0.7 489,209 + -0.5 489,209 + +0.0 489,209 + -0.8 489,209 + -0.4 489,209 + +0.2 489,209 + -0.7 489,571 + GFF1831 0.16 -2.5 489,571 + GFF1831 0.16 -1.2 490,120 + GFF1831 0.43 +0.4 490,267 + GFF1831 0.51 +0.2 490,268 - GFF1831 0.51 +0.0 490,414 + GFF1831 0.58 +0.8 490,415 - GFF1831 0.58 -0.7 490,739 - GFF1831 0.75 -0.8 490,739 - GFF1831 0.75 +0.6 490,739 - GFF1831 0.75 -2.0 490,837 + GFF1831 0.80 -0.8 490,837 + GFF1831 0.80 -0.5 490,837 + GFF1831 0.80 +0.3 490,837 + GFF1831 0.80 +0.8 490,837 + GFF1831 0.80 +1.1 490,837 + GFF1831 0.80 +1.6 490,837 + GFF1831 0.80 +1.5 490,837 + GFF1831 0.80 -1.4 490,838 - GFF1831 0.80 +0.2 490,838 - GFF1831 0.80 +0.8 490,838 - GFF1831 0.80 +0.8 490,838 - GFF1831 0.80 -1.6 490,838 - GFF1831 0.80 +0.1 490,838 - GFF1831 0.80 +0.6 490,838 - GFF1831 0.80 -0.4 490,838 - GFF1831 0.80 +0.2 490,855 + GFF1831 0.81 +0.2 490,856 - GFF1831 0.81 -0.1 490,856 - GFF1831 0.81 -0.2 490,856 - GFF1831 0.81 +0.5 490,932 - GFF1831 0.84 +0.2 490,933 + GFF1831 0.85 +1.5 490,933 + GFF1831 0.85 +0.2 491,200 + +0.2 491,200 + +0.5 491,200 + -0.4 491,200 + -0.1 491,200 + -0.9 491,200 + -0.4 491,201 - -0.3 491,201 - -0.1 491,201 - +1.5 491,323 - +0.8 491,450 - -0.1 491,469 - +0.1 491,564 + GFF1832 0.20 -1.0 491,565 - GFF1832 0.21 -0.3 491,591 + GFF1832 0.28 -0.3 491,592 - GFF1832 0.28 +1.5 491,592 - GFF1832 0.28 -0.4 491,880 - +1.4
Or see this region's nucleotide sequence