Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1801 and GFF1802 are separated by 51 nucleotides GFF1802 and GFF1803 are separated by 305 nucleotides GFF1803 and GFF1804 are separated by 4 nucleotides
GFF1801 - HTH-type transcriptional regulator DmlR, at 453,661 to 454,575
GFF1801
GFF1802 - Uric acid transporter UacT, at 454,627 to 456,018
GFF1802
GFF1803 - 5-hydroxyisourate hydrolase, at 456,324 to 456,674
GFF1803
GFF1804 - hypothetical protein, at 456,679 to 458,157
GFF1804
Position (kb) 454
455
456
457 Strain fitness (log2 ratio) -1
0
1 at 454.032 kb on + strand, within GFF1801 at 454.032 kb on + strand, within GFF1801 at 454.032 kb on + strand, within GFF1801 at 454.033 kb on - strand, within GFF1801 at 454.528 kb on + strand at 454.529 kb on - strand at 454.529 kb on - strand at 455.075 kb on + strand, within GFF1802 at 455.081 kb on + strand, within GFF1802 at 455.082 kb on - strand, within GFF1802 at 455.933 kb on + strand at 455.933 kb on + strand at 455.934 kb on - strand at 456.071 kb on + strand at 456.396 kb on + strand, within GFF1803 at 456.507 kb on + strand, within GFF1803 at 456.507 kb on + strand, within GFF1803 at 456.507 kb on + strand, within GFF1803 at 456.608 kb on - strand, within GFF1803 at 456.618 kb on + strand, within GFF1803 at 456.619 kb on - strand, within GFF1803 at 456.651 kb on + strand at 456.651 kb on + strand at 456.652 kb on - strand at 456.652 kb on - strand at 456.705 kb on + strand at 456.766 kb on + strand at 456.835 kb on + strand, within GFF1804 at 456.836 kb on - strand, within GFF1804
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 454,032 + GFF1801 0.41 +0.4 454,032 + GFF1801 0.41 +0.2 454,032 + GFF1801 0.41 +0.4 454,033 - GFF1801 0.41 +0.3 454,528 + +0.2 454,529 - +1.4 454,529 - +1.7 455,075 + GFF1802 0.32 -0.2 455,081 + GFF1802 0.33 -0.2 455,082 - GFF1802 0.33 +0.2 455,933 + -1.0 455,933 + +0.5 455,934 - -0.1 456,071 + -0.5 456,396 + GFF1803 0.21 +0.6 456,507 + GFF1803 0.52 +0.8 456,507 + GFF1803 0.52 +0.2 456,507 + GFF1803 0.52 -0.7 456,608 - GFF1803 0.81 -1.4 456,618 + GFF1803 0.84 +0.7 456,619 - GFF1803 0.84 -0.6 456,651 + -0.3 456,651 + -0.7 456,652 - +1.0 456,652 - -0.3 456,705 + -1.0 456,766 + +0.5 456,835 + GFF1804 0.11 -0.3 456,836 - GFF1804 0.11 +0.2
Or see this region's nucleotide sequence