Strain Fitness in Xanthobacter sp. DMC5 around GFF1789

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1788 and GFF1789 are separated by 85 nucleotidesGFF1789 and GFF1790 are separated by 183 nucleotides GFF1788 - Putative 3-oxopropanoate dehydrogenase, at 436,709 to 438,205 GFF1788 GFF1789 - Acyl-CoA dehydrogenase, at 438,291 to 439,460 GFF1789 GFF1790 - putative 3-hydroxyisobutyrate dehydrogenase, at 439,644 to 440,543 GFF1790 Position (kb) 438 439 440Strain fitness (log2 ratio) -2 -1 0 1at 437.402 kb on + strand, within GFF1788at 437.402 kb on + strand, within GFF1788at 437.403 kb on - strand, within GFF1788at 437.403 kb on - strand, within GFF1788at 437.408 kb on + strand, within GFF1788at 437.408 kb on + strand, within GFF1788at 437.408 kb on + strand, within GFF1788at 437.409 kb on - strand, within GFF1788at 437.409 kb on - strand, within GFF1788at 437.409 kb on - strand, within GFF1788at 437.409 kb on - strand, within GFF1788at 437.715 kb on - strand, within GFF1788at 437.798 kb on + strand, within GFF1788at 437.798 kb on + strand, within GFF1788at 437.798 kb on + strand, within GFF1788at 437.798 kb on + strand, within GFF1788at 437.846 kb on + strand, within GFF1788at 437.898 kb on - strand, within GFF1788at 437.898 kb on - strand, within GFF1788at 437.933 kb on + strand, within GFF1788at 438.048 kb on - strand, within GFF1788at 438.122 kb on + strandat 438.122 kb on + strandat 438.273 kb on + strandat 438.273 kb on + strandat 438.273 kb on + strandat 438.273 kb on + strandat 438.273 kb on + strandat 438.273 kb on + strandat 438.273 kb on + strandat 438.273 kb on + strandat 438.274 kb on - strandat 438.274 kb on - strandat 438.274 kb on - strandat 438.393 kb on + strandat 438.475 kb on - strand, within GFF1789at 438.475 kb on - strand, within GFF1789at 438.475 kb on - strand, within GFF1789at 438.570 kb on + strand, within GFF1789at 438.571 kb on - strand, within GFF1789at 438.678 kb on + strand, within GFF1789at 438.679 kb on - strand, within GFF1789at 438.753 kb on + strand, within GFF1789at 438.807 kb on + strand, within GFF1789at 438.807 kb on + strand, within GFF1789at 438.807 kb on + strand, within GFF1789at 438.807 kb on + strand, within GFF1789at 438.807 kb on + strand, within GFF1789at 438.808 kb on - strand, within GFF1789at 438.808 kb on - strand, within GFF1789at 438.808 kb on - strand, within GFF1789at 438.808 kb on - strand, within GFF1789at 438.808 kb on - strand, within GFF1789at 438.808 kb on - strand, within GFF1789at 439.098 kb on + strand, within GFF1789at 439.099 kb on - strand, within GFF1789at 439.099 kb on - strand, within GFF1789at 439.099 kb on - strand, within GFF1789at 439.351 kb on - strandat 439.601 kb on + strandat 439.601 kb on + strandat 439.601 kb on + strandat 439.605 kb on + strandat 439.605 kb on + strandat 439.605 kb on + strandat 439.605 kb on + strandat 439.605 kb on + strandat 439.605 kb on + strandat 439.605 kb on + strandat 439.606 kb on - strandat 439.606 kb on - strandat 439.606 kb on - strandat 439.606 kb on - strandat 439.606 kb on - strandat 440.298 kb on + strand, within GFF1790at 440.298 kb on + strand, within GFF1790at 440.298 kb on + strand, within GFF1790at 440.298 kb on + strand, within GFF1790at 440.299 kb on - strand, within GFF1790at 440.299 kb on - strand, within GFF1790at 440.299 kb on - strand, within GFF1790at 440.299 kb on - strand, within GFF1790at 440.299 kb on - strand, within GFF1790at 440.299 kb on - strand, within GFF1790at 440.299 kb on - strand, within GFF1790at 440.346 kb on + strand, within GFF1790at 440.346 kb on + strand, within GFF1790at 440.347 kb on - strand, within GFF1790at 440.378 kb on + strand, within GFF1790at 440.458 kb on - strandat 440.458 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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437,402 + GFF1788 0.46 -0.2
437,402 + GFF1788 0.46 -0.7
437,403 - GFF1788 0.46 -0.3
437,403 - GFF1788 0.46 +0.5
437,408 + GFF1788 0.47 -0.1
437,408 + GFF1788 0.47 -0.2
437,408 + GFF1788 0.47 +0.2
437,409 - GFF1788 0.47 -0.2
437,409 - GFF1788 0.47 +0.5
437,409 - GFF1788 0.47 +0.7
437,409 - GFF1788 0.47 -0.4
437,715 - GFF1788 0.67 -0.6
437,798 + GFF1788 0.73 -0.2
437,798 + GFF1788 0.73 +0.4
437,798 + GFF1788 0.73 +0.8
437,798 + GFF1788 0.73 +0.3
437,846 + GFF1788 0.76 -1.4
437,898 - GFF1788 0.79 +0.8
437,898 - GFF1788 0.79 +0.4
437,933 + GFF1788 0.82 +0.5
438,048 - GFF1788 0.89 -0.2
438,122 + +0.7
438,122 + +0.2
438,273 + -0.6
438,273 + -0.1
438,273 + -0.4
438,273 + +0.3
438,273 + +0.6
438,273 + +1.0
438,273 + -2.7
438,273 + +0.2
438,274 - -0.8
438,274 - -1.7
438,274 - -0.1
438,393 + +0.1
438,475 - GFF1789 0.16 +0.4
438,475 - GFF1789 0.16 +0.3
438,475 - GFF1789 0.16 +0.4
438,570 + GFF1789 0.24 +0.3
438,571 - GFF1789 0.24 -0.1
438,678 + GFF1789 0.33 +0.1
438,679 - GFF1789 0.33 -1.0
438,753 + GFF1789 0.39 +0.3
438,807 + GFF1789 0.44 -0.4
438,807 + GFF1789 0.44 +0.8
438,807 + GFF1789 0.44 -0.4
438,807 + GFF1789 0.44 -0.5
438,807 + GFF1789 0.44 -0.1
438,808 - GFF1789 0.44 -0.1
438,808 - GFF1789 0.44 -0.5
438,808 - GFF1789 0.44 +0.8
438,808 - GFF1789 0.44 +0.6
438,808 - GFF1789 0.44 +0.0
438,808 - GFF1789 0.44 -0.8
439,098 + GFF1789 0.69 +1.2
439,099 - GFF1789 0.69 +0.4
439,099 - GFF1789 0.69 -1.6
439,099 - GFF1789 0.69 +0.8
439,351 - +0.5
439,601 + -0.3
439,601 + -1.7
439,601 + -0.1
439,605 + +0.5
439,605 + -0.7
439,605 + -0.2
439,605 + -0.6
439,605 + -0.3
439,605 + -1.9
439,605 + +0.2
439,606 - +0.7
439,606 - +0.0
439,606 - -0.6
439,606 - +0.2
439,606 - -0.4
440,298 + GFF1790 0.73 +0.3
440,298 + GFF1790 0.73 +0.2
440,298 + GFF1790 0.73 -0.6
440,298 + GFF1790 0.73 +0.2
440,299 - GFF1790 0.73 +1.2
440,299 - GFF1790 0.73 +0.3
440,299 - GFF1790 0.73 -1.1
440,299 - GFF1790 0.73 +0.6
440,299 - GFF1790 0.73 -0.6
440,299 - GFF1790 0.73 +0.5
440,299 - GFF1790 0.73 -0.3
440,346 + GFF1790 0.78 +0.5
440,346 + GFF1790 0.78 -0.3
440,347 - GFF1790 0.78 -1.2
440,378 + GFF1790 0.82 +0.1
440,458 - -0.6
440,458 - -0.4

Or see this region's nucleotide sequence