Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1781 and GFF1782 are separated by 28 nucleotides GFF1782 and GFF1783 are separated by 4 nucleotides GFF1783 and GFF1784 overlap by 4 nucleotides GFF1784 and GFF1785 are separated by 71 nucleotides GFF1785 and GFF1786 are separated by 225 nucleotides
GFF1781 - Dual-specificity RNA methyltransferase RlmN, at 431,807 to 433,060
GFF1781
GFF1782 - hypothetical protein, at 433,089 to 433,481
GFF1782
GFF1783 - hypothetical protein, at 433,486 to 434,022
GFF1783
GFF1784 - hypothetical protein, at 434,019 to 434,489
GFF1784
GFF1785 - 50S ribosomal protein L28, at 434,561 to 434,857
GFF1785
GFF1786 - Endo-1,4-beta-xylanase A, at 435,083 to 435,613
GFF1786
Position (kb) 434
435 Strain fitness (log2 ratio) -2
-1
0
1 at 433.058 kb on + strand at 433.143 kb on + strand, within GFF1782 at 433.144 kb on - strand, within GFF1782 at 433.144 kb on - strand, within GFF1782 at 433.212 kb on + strand, within GFF1782 at 433.213 kb on - strand, within GFF1782 at 433.213 kb on - strand, within GFF1782 at 433.213 kb on - strand, within GFF1782 at 433.213 kb on - strand, within GFF1782 at 433.407 kb on + strand, within GFF1782 at 433.408 kb on - strand, within GFF1782 at 433.408 kb on - strand, within GFF1782 at 433.408 kb on - strand, within GFF1782 at 433.538 kb on - strand at 433.776 kb on - strand, within GFF1783 at 433.776 kb on - strand, within GFF1783 at 433.849 kb on + strand, within GFF1783 at 433.849 kb on + strand, within GFF1783 at 433.850 kb on - strand, within GFF1783 at 433.850 kb on - strand, within GFF1783 at 433.885 kb on + strand, within GFF1783 at 433.885 kb on + strand, within GFF1783 at 433.885 kb on + strand, within GFF1783 at 433.928 kb on + strand, within GFF1783 at 434.079 kb on + strand, within GFF1784 at 434.079 kb on + strand, within GFF1784 at 434.080 kb on - strand, within GFF1784 at 434.105 kb on - strand, within GFF1784 at 434.181 kb on + strand, within GFF1784 at 434.182 kb on - strand, within GFF1784 at 434.182 kb on - strand, within GFF1784 at 434.182 kb on - strand, within GFF1784 at 434.184 kb on + strand, within GFF1784 at 434.185 kb on - strand, within GFF1784 at 434.439 kb on + strand, within GFF1784 at 434.881 kb on - strand at 434.989 kb on - strand at 435.249 kb on - strand, within GFF1786 at 435.251 kb on - strand, within GFF1786
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 433,058 + +0.3 433,143 + GFF1782 0.14 -0.0 433,144 - GFF1782 0.14 -0.1 433,144 - GFF1782 0.14 -0.8 433,212 + GFF1782 0.31 +0.3 433,213 - GFF1782 0.32 -0.3 433,213 - GFF1782 0.32 +0.7 433,213 - GFF1782 0.32 -0.9 433,213 - GFF1782 0.32 -0.6 433,407 + GFF1782 0.81 +0.1 433,408 - GFF1782 0.81 +0.4 433,408 - GFF1782 0.81 -0.8 433,408 - GFF1782 0.81 -0.3 433,538 - -0.3 433,776 - GFF1783 0.54 -0.9 433,776 - GFF1783 0.54 +1.0 433,849 + GFF1783 0.68 -1.2 433,849 + GFF1783 0.68 -0.3 433,850 - GFF1783 0.68 +0.2 433,850 - GFF1783 0.68 +1.3 433,885 + GFF1783 0.74 +1.2 433,885 + GFF1783 0.74 -1.0 433,885 + GFF1783 0.74 -1.3 433,928 + GFF1783 0.82 -0.5 434,079 + GFF1784 0.13 +0.5 434,079 + GFF1784 0.13 -1.9 434,080 - GFF1784 0.13 -0.9 434,105 - GFF1784 0.18 +0.7 434,181 + GFF1784 0.34 +0.4 434,182 - GFF1784 0.35 -1.5 434,182 - GFF1784 0.35 -0.1 434,182 - GFF1784 0.35 -0.3 434,184 + GFF1784 0.35 +0.9 434,185 - GFF1784 0.35 -0.5 434,439 + GFF1784 0.89 -0.7 434,881 - -0.3 434,989 - -0.3 435,249 - GFF1786 0.31 +0.8 435,251 - GFF1786 0.32 +1.1
Or see this region's nucleotide sequence