Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1743 and GFF1744 are separated by 24 nucleotides GFF1744 and GFF1745 are separated by 187 nucleotides GFF1745 and GFF1746 are separated by 193 nucleotides
GFF1743 - Sensor histidine kinase RcsC, at 392,175 to 393,296
GFF1743
GFF1744 - Ferredoxin, 2Fe-2S, at 393,321 to 393,674
GFF1744
GFF1745 - Thiosulfate-binding protein, at 393,862 to 394,884
GFF1745
GFF1746 - Aldo-keto reductase IolS, at 395,078 to 396,064
GFF1746
Position (kb) 393
394
395 Strain fitness (log2 ratio) -1
0
1 at 392.893 kb on - strand, within GFF1743 at 392.961 kb on + strand, within GFF1743 at 392.961 kb on + strand, within GFF1743 at 392.961 kb on + strand, within GFF1743 at 392.961 kb on + strand, within GFF1743 at 392.962 kb on - strand, within GFF1743 at 392.962 kb on - strand, within GFF1743 at 392.962 kb on - strand, within GFF1743 at 393.419 kb on - strand, within GFF1744 at 393.437 kb on - strand, within GFF1744 at 393.628 kb on + strand, within GFF1744 at 393.629 kb on - strand, within GFF1744 at 393.765 kb on + strand at 393.766 kb on - strand at 394.058 kb on + strand, within GFF1745 at 394.073 kb on + strand, within GFF1745 at 394.074 kb on - strand, within GFF1745 at 394.074 kb on - strand, within GFF1745 at 394.190 kb on + strand, within GFF1745 at 394.295 kb on - strand, within GFF1745 at 394.517 kb on + strand, within GFF1745 at 394.517 kb on + strand, within GFF1745 at 394.517 kb on + strand, within GFF1745 at 394.517 kb on + strand, within GFF1745 at 394.518 kb on - strand, within GFF1745 at 394.521 kb on - strand, within GFF1745 at 394.569 kb on - strand, within GFF1745 at 394.769 kb on + strand, within GFF1745 at 394.769 kb on + strand, within GFF1745 at 394.770 kb on - strand, within GFF1745 at 394.770 kb on - strand, within GFF1745 at 394.770 kb on - strand, within GFF1745 at 395.015 kb on + strand at 395.016 kb on - strand at 395.016 kb on - strand at 395.016 kb on - strand at 395.536 kb on - strand, within GFF1746 at 395.538 kb on + strand, within GFF1746 at 395.700 kb on + strand, within GFF1746 at 395.701 kb on - strand, within GFF1746 at 395.701 kb on - strand, within GFF1746 at 395.701 kb on - strand, within GFF1746 at 395.703 kb on + strand, within GFF1746 at 395.716 kb on + strand, within GFF1746 at 395.717 kb on - strand, within GFF1746 at 395.763 kb on + strand, within GFF1746 at 395.763 kb on + strand, within GFF1746
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 392,893 - GFF1743 0.64 +0.4 392,961 + GFF1743 0.70 +0.9 392,961 + GFF1743 0.70 -1.2 392,961 + GFF1743 0.70 +0.1 392,961 + GFF1743 0.70 +0.1 392,962 - GFF1743 0.70 +0.0 392,962 - GFF1743 0.70 -0.2 392,962 - GFF1743 0.70 +0.2 393,419 - GFF1744 0.28 +0.2 393,437 - GFF1744 0.33 +0.9 393,628 + GFF1744 0.87 -0.1 393,629 - GFF1744 0.87 +0.5 393,765 + +0.4 393,766 - -0.3 394,058 + GFF1745 0.19 -0.4 394,073 + GFF1745 0.21 -0.2 394,074 - GFF1745 0.21 +0.7 394,074 - GFF1745 0.21 -0.4 394,190 + GFF1745 0.32 +0.1 394,295 - GFF1745 0.42 +0.1 394,517 + GFF1745 0.64 +0.8 394,517 + GFF1745 0.64 -0.3 394,517 + GFF1745 0.64 +1.4 394,517 + GFF1745 0.64 +0.4 394,518 - GFF1745 0.64 -0.0 394,521 - GFF1745 0.64 +0.1 394,569 - GFF1745 0.69 -0.3 394,769 + GFF1745 0.89 -0.5 394,769 + GFF1745 0.89 +1.2 394,770 - GFF1745 0.89 +1.0 394,770 - GFF1745 0.89 -0.3 394,770 - GFF1745 0.89 -0.6 395,015 + +0.7 395,016 - -0.5 395,016 - +0.0 395,016 - -0.3 395,536 - GFF1746 0.46 -0.2 395,538 + GFF1746 0.47 +0.2 395,700 + GFF1746 0.63 -0.8 395,701 - GFF1746 0.63 +0.6 395,701 - GFF1746 0.63 -0.1 395,701 - GFF1746 0.63 +0.5 395,703 + GFF1746 0.63 +0.8 395,716 + GFF1746 0.65 +0.1 395,717 - GFF1746 0.65 +0.7 395,763 + GFF1746 0.69 -0.5 395,763 + GFF1746 0.69 +1.1
Or see this region's nucleotide sequence