Strain Fitness in Xanthobacter sp. DMC5 around GFF1705

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1703 and GFF1704 overlap by 11 nucleotidesGFF1704 and GFF1705 overlap by 1 nucleotidesGFF1705 and GFF1706 are separated by 187 nucleotides GFF1703 - Spermidine/putrescine import ATP-binding protein PotA, at 351,993 to 353,150 GFF1703 GFF1704 - Inner membrane ABC transporter permease protein YdcV, at 353,140 to 353,982 GFF1704 GFF1705 - hypothetical protein, at 353,982 to 354,833 GFF1705 GFF1706 - Spermidine/putrescine-binding periplasmic protein, at 355,021 to 356,052 GFF1706 Position (kb) 353 354 355Strain fitness (log2 ratio) -2 -1 0 1at 353.225 kb on + strand, within GFF1704at 353.225 kb on + strand, within GFF1704at 353.226 kb on - strand, within GFF1704at 353.226 kb on - strand, within GFF1704at 353.262 kb on - strand, within GFF1704at 353.273 kb on + strand, within GFF1704at 353.273 kb on + strand, within GFF1704at 353.273 kb on + strand, within GFF1704at 353.273 kb on + strand, within GFF1704at 353.273 kb on + strand, within GFF1704at 353.274 kb on - strand, within GFF1704at 353.274 kb on - strand, within GFF1704at 353.274 kb on - strand, within GFF1704at 353.274 kb on - strand, within GFF1704at 353.279 kb on + strand, within GFF1704at 353.280 kb on - strand, within GFF1704at 353.280 kb on - strand, within GFF1704at 353.492 kb on + strand, within GFF1704at 353.492 kb on + strand, within GFF1704at 353.492 kb on + strand, within GFF1704at 353.493 kb on - strand, within GFF1704at 353.493 kb on - strand, within GFF1704at 353.493 kb on - strand, within GFF1704at 353.493 kb on - strand, within GFF1704at 353.493 kb on - strand, within GFF1704at 353.899 kb on - strandat 354.116 kb on - strand, within GFF1705at 354.116 kb on - strand, within GFF1705at 354.299 kb on - strand, within GFF1705at 354.484 kb on + strand, within GFF1705at 354.484 kb on + strand, within GFF1705at 354.484 kb on + strand, within GFF1705at 354.485 kb on - strand, within GFF1705at 354.485 kb on - strand, within GFF1705at 354.528 kb on - strand, within GFF1705at 354.528 kb on - strand, within GFF1705at 354.658 kb on + strand, within GFF1705at 354.659 kb on - strand, within GFF1705at 354.659 kb on - strand, within GFF1705at 354.727 kb on + strand, within GFF1705at 354.727 kb on + strand, within GFF1705at 354.742 kb on + strand, within GFF1705at 354.742 kb on + strand, within GFF1705at 354.742 kb on + strand, within GFF1705at 354.742 kb on + strand, within GFF1705at 354.742 kb on + strand, within GFF1705at 354.742 kb on + strand, within GFF1705at 354.742 kb on + strand, within GFF1705at 354.974 kb on - strandat 355.341 kb on - strand, within GFF1706at 355.367 kb on + strand, within GFF1706at 355.367 kb on + strand, within GFF1706at 355.368 kb on - strand, within GFF1706at 355.370 kb on + strand, within GFF1706at 355.370 kb on + strand, within GFF1706at 355.371 kb on - strand, within GFF1706at 355.371 kb on - strand, within GFF1706at 355.371 kb on - strand, within GFF1706at 355.448 kb on + strand, within GFF1706at 355.448 kb on + strand, within GFF1706at 355.449 kb on - strand, within GFF1706at 355.449 kb on - strand, within GFF1706at 355.449 kb on - strand, within GFF1706at 355.667 kb on + strand, within GFF1706at 355.667 kb on + strand, within GFF1706at 355.667 kb on + strand, within GFF1706at 355.668 kb on - strand, within GFF1706at 355.668 kb on - strand, within GFF1706at 355.668 kb on - strand, within GFF1706at 355.668 kb on - strand, within GFF1706at 355.668 kb on - strand, within GFF1706at 355.668 kb on - strand, within GFF1706at 355.673 kb on + strand, within GFF1706at 355.673 kb on + strand, within GFF1706at 355.673 kb on + strand, within GFF1706at 355.674 kb on - strand, within GFF1706at 355.674 kb on - strand, within GFF1706

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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353,225 + GFF1704 0.10 +0.0
353,225 + GFF1704 0.10 -0.9
353,226 - GFF1704 0.10 +0.4
353,226 - GFF1704 0.10 -0.9
353,262 - GFF1704 0.14 -0.2
353,273 + GFF1704 0.16 -0.4
353,273 + GFF1704 0.16 -0.8
353,273 + GFF1704 0.16 -1.2
353,273 + GFF1704 0.16 +0.3
353,273 + GFF1704 0.16 +0.8
353,274 - GFF1704 0.16 +0.3
353,274 - GFF1704 0.16 -1.1
353,274 - GFF1704 0.16 -0.3
353,274 - GFF1704 0.16 +0.6
353,279 + GFF1704 0.16 -0.3
353,280 - GFF1704 0.17 +0.9
353,280 - GFF1704 0.17 -0.3
353,492 + GFF1704 0.42 -0.2
353,492 + GFF1704 0.42 +0.8
353,492 + GFF1704 0.42 -0.2
353,493 - GFF1704 0.42 -0.7
353,493 - GFF1704 0.42 +0.4
353,493 - GFF1704 0.42 +0.5
353,493 - GFF1704 0.42 +1.0
353,493 - GFF1704 0.42 +0.1
353,899 - -0.5
354,116 - GFF1705 0.16 +0.5
354,116 - GFF1705 0.16 -0.2
354,299 - GFF1705 0.37 +0.4
354,484 + GFF1705 0.59 +0.2
354,484 + GFF1705 0.59 +0.3
354,484 + GFF1705 0.59 -0.3
354,485 - GFF1705 0.59 -1.2
354,485 - GFF1705 0.59 +0.8
354,528 - GFF1705 0.64 +1.0
354,528 - GFF1705 0.64 +0.4
354,658 + GFF1705 0.79 -0.4
354,659 - GFF1705 0.79 +0.3
354,659 - GFF1705 0.79 +0.5
354,727 + GFF1705 0.87 +0.8
354,727 + GFF1705 0.87 +0.6
354,742 + GFF1705 0.89 +0.1
354,742 + GFF1705 0.89 -0.1
354,742 + GFF1705 0.89 -0.4
354,742 + GFF1705 0.89 -0.6
354,742 + GFF1705 0.89 +0.6
354,742 + GFF1705 0.89 -0.1
354,742 + GFF1705 0.89 +0.4
354,974 - -2.1
355,341 - GFF1706 0.31 +0.2
355,367 + GFF1706 0.34 -0.0
355,367 + GFF1706 0.34 +0.6
355,368 - GFF1706 0.34 +1.2
355,370 + GFF1706 0.34 +0.2
355,370 + GFF1706 0.34 -0.7
355,371 - GFF1706 0.34 -2.0
355,371 - GFF1706 0.34 +0.2
355,371 - GFF1706 0.34 -0.3
355,448 + GFF1706 0.41 -0.3
355,448 + GFF1706 0.41 -0.1
355,449 - GFF1706 0.41 -0.2
355,449 - GFF1706 0.41 -0.2
355,449 - GFF1706 0.41 +0.5
355,667 + GFF1706 0.63 -0.3
355,667 + GFF1706 0.63 -0.4
355,667 + GFF1706 0.63 +0.8
355,668 - GFF1706 0.63 -0.2
355,668 - GFF1706 0.63 +0.0
355,668 - GFF1706 0.63 -0.6
355,668 - GFF1706 0.63 +0.3
355,668 - GFF1706 0.63 -1.0
355,668 - GFF1706 0.63 +0.6
355,673 + GFF1706 0.63 +0.4
355,673 + GFF1706 0.63 -0.7
355,673 + GFF1706 0.63 +0.2
355,674 - GFF1706 0.63 -0.5
355,674 - GFF1706 0.63 +0.7

Or see this region's nucleotide sequence