Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1680 and GFF1681 are separated by 66 nucleotides GFF1681 and GFF1682 are separated by 25 nucleotides GFF1682 and GFF1683 are separated by 86 nucleotides GFF1683 and GFF1684 overlap by 4 nucleotides
GFF1680 - hypothetical protein, at 334,074 to 334,406
GFF1680
GFF1681 - hypothetical protein, at 334,473 to 334,784
GFF1681
GFF1682 - hypothetical protein, at 334,810 to 335,154
GFF1682
GFF1683 - hypothetical protein, at 335,241 to 335,705
GFF1683
GFF1684 - hypothetical protein, at 335,702 to 336,187
GFF1684
Position (kb) 334
335
336 Strain fitness (log2 ratio) -2
-1
0
1
2 at 333.965 kb on + strand at 333.965 kb on + strand at 333.966 kb on - strand at 334.016 kb on + strand at 334.071 kb on - strand at 334.086 kb on - strand at 334.143 kb on + strand, within GFF1680 at 334.256 kb on - strand, within GFF1680 at 334.256 kb on - strand, within GFF1680 at 334.285 kb on - strand, within GFF1680 at 334.297 kb on - strand, within GFF1680 at 334.297 kb on - strand, within GFF1680 at 334.324 kb on - strand, within GFF1680 at 334.405 kb on - strand at 334.418 kb on - strand at 334.418 kb on - strand at 334.470 kb on - strand at 334.471 kb on + strand at 334.526 kb on + strand, within GFF1681 at 334.574 kb on - strand, within GFF1681 at 334.624 kb on + strand, within GFF1681 at 334.625 kb on - strand, within GFF1681 at 334.625 kb on - strand, within GFF1681 at 334.625 kb on - strand, within GFF1681 at 334.662 kb on + strand, within GFF1681 at 334.663 kb on - strand, within GFF1681 at 334.663 kb on - strand, within GFF1681 at 334.674 kb on + strand, within GFF1681 at 334.675 kb on - strand, within GFF1681 at 334.701 kb on + strand, within GFF1681 at 334.702 kb on - strand, within GFF1681 at 334.879 kb on + strand, within GFF1682 at 334.880 kb on - strand, within GFF1682 at 334.880 kb on - strand, within GFF1682 at 335.032 kb on + strand, within GFF1682 at 335.032 kb on + strand, within GFF1682 at 335.032 kb on + strand, within GFF1682 at 335.032 kb on + strand, within GFF1682 at 335.033 kb on - strand, within GFF1682 at 335.033 kb on - strand, within GFF1682 at 335.033 kb on - strand, within GFF1682 at 335.033 kb on - strand, within GFF1682 at 335.033 kb on - strand, within GFF1682 at 335.065 kb on + strand, within GFF1682 at 335.708 kb on + strand at 335.708 kb on + strand at 335.708 kb on + strand at 335.708 kb on + strand at 335.709 kb on - strand at 335.709 kb on - strand at 335.709 kb on - strand at 335.709 kb on - strand at 336.023 kb on + strand, within GFF1684 at 336.024 kb on - strand, within GFF1684 at 336.039 kb on + strand, within GFF1684 at 336.040 kb on - strand, within GFF1684 at 336.040 kb on - strand, within GFF1684 at 336.041 kb on - strand, within GFF1684 at 336.110 kb on + strand, within GFF1684 at 336.110 kb on + strand, within GFF1684 at 336.110 kb on + strand, within GFF1684 at 336.110 kb on + strand, within GFF1684 at 336.110 kb on + strand, within GFF1684
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 333,965 + -1.5 333,965 + -0.6 333,966 - -0.2 334,016 + +0.3 334,071 - +0.5 334,086 - +0.2 334,143 + GFF1680 0.21 +0.0 334,256 - GFF1680 0.55 +0.9 334,256 - GFF1680 0.55 -0.4 334,285 - GFF1680 0.63 +0.2 334,297 - GFF1680 0.67 -0.5 334,297 - GFF1680 0.67 -0.3 334,324 - GFF1680 0.75 +0.3 334,405 - +0.7 334,418 - -0.0 334,418 - +1.2 334,470 - +1.8 334,471 + +0.2 334,526 + GFF1681 0.17 -0.6 334,574 - GFF1681 0.32 -0.6 334,624 + GFF1681 0.48 +0.1 334,625 - GFF1681 0.49 -1.0 334,625 - GFF1681 0.49 -0.7 334,625 - GFF1681 0.49 +0.3 334,662 + GFF1681 0.61 -0.8 334,663 - GFF1681 0.61 +0.5 334,663 - GFF1681 0.61 -0.2 334,674 + GFF1681 0.64 -0.1 334,675 - GFF1681 0.65 +0.3 334,701 + GFF1681 0.73 +1.1 334,702 - GFF1681 0.73 +0.7 334,879 + GFF1682 0.20 -0.1 334,880 - GFF1682 0.20 +0.7 334,880 - GFF1682 0.20 -0.2 335,032 + GFF1682 0.64 -1.6 335,032 + GFF1682 0.64 -1.2 335,032 + GFF1682 0.64 -0.3 335,032 + GFF1682 0.64 +0.4 335,033 - GFF1682 0.65 -1.5 335,033 - GFF1682 0.65 -0.1 335,033 - GFF1682 0.65 +0.0 335,033 - GFF1682 0.65 -0.9 335,033 - GFF1682 0.65 -0.1 335,065 + GFF1682 0.74 -0.2 335,708 + +0.8 335,708 + -0.6 335,708 + -1.2 335,708 + -0.3 335,709 - -1.8 335,709 - -1.0 335,709 - -0.2 335,709 - -0.2 336,023 + GFF1684 0.66 -1.3 336,024 - GFF1684 0.66 -0.1 336,039 + GFF1684 0.69 +0.6 336,040 - GFF1684 0.70 +0.4 336,040 - GFF1684 0.70 +0.6 336,041 - GFF1684 0.70 -0.2 336,110 + GFF1684 0.84 -0.7 336,110 + GFF1684 0.84 -0.2 336,110 + GFF1684 0.84 +0.7 336,110 + GFF1684 0.84 -0.5 336,110 + GFF1684 0.84 -0.0
Or see this region's nucleotide sequence