Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1626 and GFF1627 are separated by 446 nucleotides GFF1627 and GFF1628 are separated by 67 nucleotides GFF1628 and GFF1629 overlap by 1 nucleotides
GFF1626 - hypothetical protein, at 275,111 to 275,653
GFF1626
GFF1627 - hypothetical protein, at 276,100 to 276,327
GFF1627
GFF1628 - hypothetical protein, at 276,395 to 276,988
GFF1628
GFF1629 - hypothetical protein, at 276,988 to 279,570
GFF1629
Position (kb) 276
277 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 275.418 kb on + strand, within GFF1626 at 275.419 kb on - strand, within GFF1626 at 275.419 kb on - strand, within GFF1626 at 275.482 kb on + strand, within GFF1626 at 275.483 kb on - strand, within GFF1626 at 275.627 kb on - strand at 275.627 kb on - strand at 275.832 kb on - strand at 276.061 kb on + strand at 276.100 kb on - strand at 276.100 kb on - strand at 276.100 kb on - strand at 276.122 kb on + strand at 276.423 kb on - strand at 276.423 kb on - strand at 276.423 kb on - strand at 276.449 kb on + strand at 276.667 kb on - strand, within GFF1628 at 276.740 kb on + strand, within GFF1628 at 276.741 kb on - strand, within GFF1628 at 276.741 kb on - strand, within GFF1628 at 276.741 kb on - strand, within GFF1628 at 276.741 kb on - strand, within GFF1628 at 276.777 kb on - strand, within GFF1628 at 276.787 kb on + strand, within GFF1628 at 276.787 kb on + strand, within GFF1628 at 276.787 kb on + strand, within GFF1628 at 276.787 kb on + strand, within GFF1628 at 276.787 kb on + strand, within GFF1628 at 276.788 kb on - strand, within GFF1628 at 277.046 kb on + strand at 277.047 kb on - strand at 277.047 kb on - strand at 277.336 kb on + strand, within GFF1629 at 277.336 kb on + strand, within GFF1629 at 277.337 kb on - strand, within GFF1629 at 277.432 kb on + strand, within GFF1629 at 277.433 kb on - strand, within GFF1629 at 277.469 kb on + strand, within GFF1629 at 277.469 kb on + strand, within GFF1629 at 277.470 kb on - strand, within GFF1629 at 277.470 kb on - strand, within GFF1629 at 277.470 kb on - strand, within GFF1629 at 277.470 kb on - strand, within GFF1629 at 277.470 kb on - strand, within GFF1629 at 277.471 kb on + strand, within GFF1629 at 277.471 kb on + strand, within GFF1629 at 277.471 kb on + strand, within GFF1629 at 277.471 kb on + strand, within GFF1629 at 277.471 kb on + strand, within GFF1629 at 277.471 kb on + strand, within GFF1629 at 277.471 kb on + strand, within GFF1629 at 277.471 kb on + strand, within GFF1629 at 277.471 kb on + strand, within GFF1629 at 277.471 kb on + strand, within GFF1629 at 277.471 kb on + strand, within GFF1629 at 277.471 kb on + strand, within GFF1629 at 277.472 kb on - strand, within GFF1629 at 277.472 kb on - strand, within GFF1629 at 277.472 kb on - strand, within GFF1629 at 277.472 kb on - strand, within GFF1629 at 277.472 kb on - strand, within GFF1629 at 277.472 kb on - strand, within GFF1629 at 277.780 kb on + strand, within GFF1629
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 275,418 + GFF1626 0.57 +0.4 275,419 - GFF1626 0.57 +1.0 275,419 - GFF1626 0.57 +0.8 275,482 + GFF1626 0.68 +3.0 275,483 - GFF1626 0.69 +0.8 275,627 - +0.1 275,627 - -1.2 275,832 - -0.4 276,061 + +0.1 276,100 - -1.2 276,100 - +0.0 276,100 - -0.3 276,122 + -0.4 276,423 - -0.2 276,423 - -0.7 276,423 - -0.3 276,449 + -0.9 276,667 - GFF1628 0.46 -0.2 276,740 + GFF1628 0.58 -0.1 276,741 - GFF1628 0.58 -1.2 276,741 - GFF1628 0.58 -1.6 276,741 - GFF1628 0.58 -0.0 276,741 - GFF1628 0.58 +1.1 276,777 - GFF1628 0.64 -0.6 276,787 + GFF1628 0.66 -0.2 276,787 + GFF1628 0.66 -1.6 276,787 + GFF1628 0.66 +0.1 276,787 + GFF1628 0.66 -0.2 276,787 + GFF1628 0.66 +0.2 276,788 - GFF1628 0.66 -0.2 277,046 + -2.7 277,047 - -0.4 277,047 - +0.1 277,336 + GFF1629 0.13 -1.3 277,336 + GFF1629 0.13 -1.3 277,337 - GFF1629 0.14 +0.3 277,432 + GFF1629 0.17 -0.2 277,433 - GFF1629 0.17 +1.4 277,469 + GFF1629 0.19 -0.4 277,469 + GFF1629 0.19 -0.9 277,470 - GFF1629 0.19 -0.1 277,470 - GFF1629 0.19 +0.1 277,470 - GFF1629 0.19 -0.4 277,470 - GFF1629 0.19 -0.1 277,470 - GFF1629 0.19 +0.8 277,471 + GFF1629 0.19 -0.2 277,471 + GFF1629 0.19 +0.4 277,471 + GFF1629 0.19 -0.1 277,471 + GFF1629 0.19 -0.2 277,471 + GFF1629 0.19 +1.1 277,471 + GFF1629 0.19 +0.3 277,471 + GFF1629 0.19 -0.2 277,471 + GFF1629 0.19 +0.0 277,471 + GFF1629 0.19 +0.5 277,471 + GFF1629 0.19 +0.9 277,471 + GFF1629 0.19 +0.5 277,471 + GFF1629 0.19 -0.4 277,472 - GFF1629 0.19 -0.1 277,472 - GFF1629 0.19 +0.2 277,472 - GFF1629 0.19 -2.3 277,472 - GFF1629 0.19 +0.2 277,472 - GFF1629 0.19 -0.3 277,472 - GFF1629 0.19 -0.5 277,780 + GFF1629 0.31 -0.2
Or see this region's nucleotide sequence