Strain Fitness in Xanthobacter sp. DMC5 around GFF1604

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1602 and GFF1603 are separated by 25 nucleotidesGFF1603 and GFF1604 overlap by 1 nucleotidesGFF1604 and GFF1605 are separated by 17 nucleotidesGFF1605 and GFF1606 overlap by 62 nucleotides GFF1602 - Alpha-ketoglutaric semialdehyde dehydrogenase 1, at 252,230 to 253,669 GFF1602 GFF1603 - hypothetical protein, at 253,695 to 254,663 GFF1603 GFF1604 - High-affinity branched-chain amino acid transport system permease protein LivH, at 254,663 to 255,541 GFF1604 GFF1605 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 255,559 to 256,320 GFF1605 GFF1606 - Ribose import ATP-binding protein RbsA, at 256,259 to 257,020 GFF1606 Position (kb) 254 255 256Strain fitness (log2 ratio) -2 -1 0 1 2at 253.676 kb on + strandat 253.676 kb on + strandat 253.676 kb on + strandat 253.676 kb on + strandat 253.677 kb on - strandat 253.677 kb on - strandat 253.677 kb on - strandat 253.677 kb on - strandat 253.677 kb on - strandat 253.677 kb on - strandat 253.697 kb on - strandat 253.719 kb on + strandat 253.720 kb on - strandat 253.961 kb on + strand, within GFF1603at 253.961 kb on + strand, within GFF1603at 254.017 kb on + strand, within GFF1603at 254.017 kb on + strand, within GFF1603at 254.017 kb on + strand, within GFF1603at 254.017 kb on + strand, within GFF1603at 254.017 kb on + strand, within GFF1603at 254.017 kb on + strand, within GFF1603at 254.018 kb on - strand, within GFF1603at 254.018 kb on - strand, within GFF1603at 254.018 kb on - strand, within GFF1603at 254.018 kb on - strand, within GFF1603at 254.018 kb on - strand, within GFF1603at 254.032 kb on + strand, within GFF1603at 254.032 kb on + strand, within GFF1603at 254.260 kb on + strand, within GFF1603at 254.261 kb on - strand, within GFF1603at 254.405 kb on + strand, within GFF1603at 254.406 kb on - strand, within GFF1603at 254.406 kb on - strand, within GFF1603at 254.413 kb on + strand, within GFF1603at 254.423 kb on + strand, within GFF1603at 254.423 kb on + strand, within GFF1603at 254.423 kb on + strand, within GFF1603at 254.424 kb on - strand, within GFF1603at 254.424 kb on - strand, within GFF1603at 254.424 kb on - strand, within GFF1603at 254.425 kb on + strand, within GFF1603at 254.425 kb on + strand, within GFF1603at 254.425 kb on + strand, within GFF1603at 254.426 kb on - strand, within GFF1603at 254.477 kb on - strand, within GFF1603at 254.477 kb on - strand, within GFF1603at 254.515 kb on + strand, within GFF1603at 254.515 kb on + strand, within GFF1603at 254.515 kb on + strand, within GFF1603at 254.515 kb on + strand, within GFF1603at 254.546 kb on - strand, within GFF1603at 254.717 kb on - strandat 254.735 kb on - strandat 254.752 kb on - strand, within GFF1604at 254.752 kb on - strand, within GFF1604at 254.756 kb on + strand, within GFF1604at 254.756 kb on + strand, within GFF1604at 254.756 kb on + strand, within GFF1604at 254.756 kb on + strand, within GFF1604at 254.756 kb on + strand, within GFF1604at 254.756 kb on + strand, within GFF1604at 254.756 kb on + strand, within GFF1604at 254.756 kb on + strand, within GFF1604at 254.756 kb on + strand, within GFF1604at 254.757 kb on - strand, within GFF1604at 254.757 kb on - strand, within GFF1604at 254.757 kb on - strand, within GFF1604at 254.892 kb on + strand, within GFF1604at 254.892 kb on + strand, within GFF1604at 254.892 kb on + strand, within GFF1604at 254.893 kb on - strand, within GFF1604at 254.947 kb on - strand, within GFF1604at 255.024 kb on + strand, within GFF1604at 255.024 kb on + strand, within GFF1604at 255.024 kb on + strand, within GFF1604at 255.024 kb on + strand, within GFF1604at 255.106 kb on - strand, within GFF1604at 255.106 kb on - strand, within GFF1604at 255.106 kb on - strand, within GFF1604at 255.106 kb on - strand, within GFF1604at 255.106 kb on - strand, within GFF1604at 255.200 kb on + strand, within GFF1604at 255.200 kb on + strand, within GFF1604at 255.200 kb on + strand, within GFF1604at 255.201 kb on - strand, within GFF1604at 255.246 kb on + strand, within GFF1604at 255.247 kb on - strand, within GFF1604at 255.264 kb on + strand, within GFF1604at 255.264 kb on + strand, within GFF1604at 255.265 kb on - strand, within GFF1604at 255.265 kb on - strand, within GFF1604at 255.345 kb on + strand, within GFF1604at 255.360 kb on + strand, within GFF1604at 255.360 kb on + strand, within GFF1604at 255.361 kb on - strand, within GFF1604at 255.361 kb on - strand, within GFF1604at 255.474 kb on + strandat 255.474 kb on + strandat 255.474 kb on + strandat 255.475 kb on - strandat 255.475 kb on - strandat 255.475 kb on - strandat 255.476 kb on + strandat 255.488 kb on + strandat 255.513 kb on + strandat 255.513 kb on + strandat 255.514 kb on - strandat 255.572 kb on + strandat 255.573 kb on - strandat 255.650 kb on + strand, within GFF1605at 255.650 kb on + strand, within GFF1605at 255.651 kb on - strand, within GFF1605at 255.927 kb on + strand, within GFF1605at 255.928 kb on - strand, within GFF1605at 255.989 kb on + strand, within GFF1605at 255.989 kb on + strand, within GFF1605at 255.990 kb on - strand, within GFF1605at 255.990 kb on - strand, within GFF1605at 256.013 kb on + strand, within GFF1605at 256.014 kb on - strand, within GFF1605at 256.092 kb on - strand, within GFF1605at 256.281 kb on + strandat 256.281 kb on + strandat 256.281 kb on + strandat 256.281 kb on + strandat 256.282 kb on - strandat 256.282 kb on - strandat 256.282 kb on - strandat 256.282 kb on - strandat 256.282 kb on - strandat 256.282 kb on - strandat 256.321 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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253,676 + -0.7
253,676 + +0.3
253,676 + +0.2
253,676 + +0.6
253,677 - +0.2
253,677 - -0.4
253,677 - -0.4
253,677 - +0.4
253,677 - -0.9
253,677 - -0.5
253,697 - +0.8
253,719 + -0.5
253,720 - -0.1
253,961 + GFF1603 0.27 +0.0
253,961 + GFF1603 0.27 -2.1
254,017 + GFF1603 0.33 -0.1
254,017 + GFF1603 0.33 +0.3
254,017 + GFF1603 0.33 +0.8
254,017 + GFF1603 0.33 -1.2
254,017 + GFF1603 0.33 -0.3
254,017 + GFF1603 0.33 +0.4
254,018 - GFF1603 0.33 -1.0
254,018 - GFF1603 0.33 -1.0
254,018 - GFF1603 0.33 +0.8
254,018 - GFF1603 0.33 +0.7
254,018 - GFF1603 0.33 -1.2
254,032 + GFF1603 0.35 -0.9
254,032 + GFF1603 0.35 -0.2
254,260 + GFF1603 0.58 +1.2
254,261 - GFF1603 0.58 -0.3
254,405 + GFF1603 0.73 -0.4
254,406 - GFF1603 0.73 +0.7
254,406 - GFF1603 0.73 -0.2
254,413 + GFF1603 0.74 -0.5
254,423 + GFF1603 0.75 +0.2
254,423 + GFF1603 0.75 -1.5
254,423 + GFF1603 0.75 -0.0
254,424 - GFF1603 0.75 +1.1
254,424 - GFF1603 0.75 -0.2
254,424 - GFF1603 0.75 +0.5
254,425 + GFF1603 0.75 -0.4
254,425 + GFF1603 0.75 -0.6
254,425 + GFF1603 0.75 +0.8
254,426 - GFF1603 0.75 -0.1
254,477 - GFF1603 0.81 +0.1
254,477 - GFF1603 0.81 -0.5
254,515 + GFF1603 0.85 -0.6
254,515 + GFF1603 0.85 +0.1
254,515 + GFF1603 0.85 +0.5
254,515 + GFF1603 0.85 +0.6
254,546 - GFF1603 0.88 +0.3
254,717 - +1.3
254,735 - -0.1
254,752 - GFF1604 0.10 -0.4
254,752 - GFF1604 0.10 +0.2
254,756 + GFF1604 0.11 -0.6
254,756 + GFF1604 0.11 +0.4
254,756 + GFF1604 0.11 -0.7
254,756 + GFF1604 0.11 -0.3
254,756 + GFF1604 0.11 -0.9
254,756 + GFF1604 0.11 +1.5
254,756 + GFF1604 0.11 +0.6
254,756 + GFF1604 0.11 +0.3
254,756 + GFF1604 0.11 +0.8
254,757 - GFF1604 0.11 -0.2
254,757 - GFF1604 0.11 -0.3
254,757 - GFF1604 0.11 -1.5
254,892 + GFF1604 0.26 +0.7
254,892 + GFF1604 0.26 -0.7
254,892 + GFF1604 0.26 +0.7
254,893 - GFF1604 0.26 +0.5
254,947 - GFF1604 0.32 +0.3
255,024 + GFF1604 0.41 +0.1
255,024 + GFF1604 0.41 -0.4
255,024 + GFF1604 0.41 -1.3
255,024 + GFF1604 0.41 +2.0
255,106 - GFF1604 0.50 -0.5
255,106 - GFF1604 0.50 +0.1
255,106 - GFF1604 0.50 -1.1
255,106 - GFF1604 0.50 -0.2
255,106 - GFF1604 0.50 +0.3
255,200 + GFF1604 0.61 -0.0
255,200 + GFF1604 0.61 -0.2
255,200 + GFF1604 0.61 -0.8
255,201 - GFF1604 0.61 +0.1
255,246 + GFF1604 0.66 -0.5
255,247 - GFF1604 0.66 +0.3
255,264 + GFF1604 0.68 +0.5
255,264 + GFF1604 0.68 +0.7
255,265 - GFF1604 0.68 -0.3
255,265 - GFF1604 0.68 -0.8
255,345 + GFF1604 0.78 +0.2
255,360 + GFF1604 0.79 +0.6
255,360 + GFF1604 0.79 +0.2
255,361 - GFF1604 0.79 +0.6
255,361 - GFF1604 0.79 +0.2
255,474 + +0.1
255,474 + -0.6
255,474 + -0.7
255,475 - +0.2
255,475 - -0.2
255,475 - +0.1
255,476 + +0.9
255,488 + +0.1
255,513 + +0.2
255,513 + -0.2
255,514 - -0.1
255,572 + -0.2
255,573 - +0.7
255,650 + GFF1605 0.12 -0.2
255,650 + GFF1605 0.12 +0.7
255,651 - GFF1605 0.12 +0.5
255,927 + GFF1605 0.48 +0.4
255,928 - GFF1605 0.48 -0.7
255,989 + GFF1605 0.56 -0.4
255,989 + GFF1605 0.56 -0.9
255,990 - GFF1605 0.57 -0.5
255,990 - GFF1605 0.57 -0.5
256,013 + GFF1605 0.60 -0.1
256,014 - GFF1605 0.60 +0.3
256,092 - GFF1605 0.70 -0.1
256,281 + -0.8
256,281 + +0.2
256,281 + -0.7
256,281 + -0.5
256,282 - +0.0
256,282 - +0.2
256,282 - -0.9
256,282 - +0.0
256,282 - -0.2
256,282 - -0.4
256,321 - -0.5

Or see this region's nucleotide sequence