Strain Fitness in Xanthobacter sp. DMC5 around GFF1574

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1573 and GFF1574 overlap by 17 nucleotidesGFF1574 and GFF1575 overlap by 1 nucleotides GFF1573 - Multidrug resistance protein MdtN, at 217,913 to 218,983 GFF1573 GFF1574 - hypothetical protein, at 218,967 to 220,853 GFF1574 GFF1575 - hypothetical protein, at 220,853 to 222,433 GFF1575 Position (kb) 218 219 220 221Strain fitness (log2 ratio) -2 -1 0 1at 218.027 kb on + strand, within GFF1573at 218.027 kb on + strand, within GFF1573at 218.027 kb on + strand, within GFF1573at 218.027 kb on + strand, within GFF1573at 218.027 kb on + strand, within GFF1573at 218.027 kb on + strand, within GFF1573at 218.028 kb on - strand, within GFF1573at 218.028 kb on - strand, within GFF1573at 218.028 kb on - strand, within GFF1573at 218.028 kb on - strand, within GFF1573at 218.093 kb on - strand, within GFF1573at 218.093 kb on - strand, within GFF1573at 218.192 kb on + strand, within GFF1573at 218.192 kb on + strand, within GFF1573at 218.384 kb on + strand, within GFF1573at 218.385 kb on - strand, within GFF1573at 218.385 kb on - strand, within GFF1573at 218.385 kb on - strand, within GFF1573at 218.744 kb on + strand, within GFF1573at 218.744 kb on + strand, within GFF1573at 218.744 kb on + strand, within GFF1573at 218.744 kb on + strand, within GFF1573at 218.745 kb on - strand, within GFF1573at 218.745 kb on - strand, within GFF1573at 218.745 kb on - strand, within GFF1573at 219.112 kb on - strandat 219.138 kb on + strandat 219.138 kb on + strandat 219.138 kb on + strandat 219.138 kb on + strandat 219.432 kb on + strand, within GFF1574at 219.432 kb on + strand, within GFF1574at 219.432 kb on + strand, within GFF1574at 219.432 kb on + strand, within GFF1574at 219.433 kb on - strand, within GFF1574at 219.711 kb on + strand, within GFF1574at 219.712 kb on - strand, within GFF1574at 219.854 kb on - strand, within GFF1574at 219.854 kb on - strand, within GFF1574at 219.854 kb on - strand, within GFF1574at 219.854 kb on - strand, within GFF1574at 219.981 kb on + strand, within GFF1574at 219.982 kb on - strand, within GFF1574at 220.026 kb on + strand, within GFF1574at 220.036 kb on - strand, within GFF1574at 220.036 kb on - strand, within GFF1574at 220.065 kb on - strand, within GFF1574at 220.065 kb on - strand, within GFF1574at 220.065 kb on - strand, within GFF1574at 220.083 kb on + strand, within GFF1574at 220.083 kb on + strand, within GFF1574at 220.083 kb on + strand, within GFF1574at 220.084 kb on - strand, within GFF1574at 220.410 kb on + strand, within GFF1574at 220.410 kb on + strand, within GFF1574at 220.410 kb on + strand, within GFF1574at 220.411 kb on - strand, within GFF1574at 220.674 kb on - strandat 220.674 kb on - strandat 221.153 kb on + strand, within GFF1575at 221.154 kb on - strand, within GFF1575at 221.154 kb on - strand, within GFF1575at 221.154 kb on - strand, within GFF1575at 221.264 kb on + strand, within GFF1575at 221.264 kb on + strand, within GFF1575at 221.264 kb on + strand, within GFF1575at 221.264 kb on + strand, within GFF1575at 221.265 kb on - strand, within GFF1575at 221.265 kb on - strand, within GFF1575at 221.265 kb on - strand, within GFF1575at 221.519 kb on + strand, within GFF1575at 221.520 kb on - strand, within GFF1575at 221.526 kb on + strand, within GFF1575at 221.527 kb on - strand, within GFF1575at 221.528 kb on + strand, within GFF1575at 221.587 kb on + strand, within GFF1575at 221.588 kb on - strand, within GFF1575at 221.588 kb on - strand, within GFF1575at 221.632 kb on + strand, within GFF1575at 221.632 kb on + strand, within GFF1575at 221.717 kb on + strand, within GFF1575at 221.718 kb on - strand, within GFF1575at 221.718 kb on - strand, within GFF1575

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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218,027 + GFF1573 0.11 +0.5
218,027 + GFF1573 0.11 -0.1
218,027 + GFF1573 0.11 -0.9
218,027 + GFF1573 0.11 +1.2
218,027 + GFF1573 0.11 +0.2
218,027 + GFF1573 0.11 -1.2
218,028 - GFF1573 0.11 -0.7
218,028 - GFF1573 0.11 -0.5
218,028 - GFF1573 0.11 +0.1
218,028 - GFF1573 0.11 -0.3
218,093 - GFF1573 0.17 +0.5
218,093 - GFF1573 0.17 +1.5
218,192 + GFF1573 0.26 +0.1
218,192 + GFF1573 0.26 -1.1
218,384 + GFF1573 0.44 -0.2
218,385 - GFF1573 0.44 +1.4
218,385 - GFF1573 0.44 -0.3
218,385 - GFF1573 0.44 +0.5
218,744 + GFF1573 0.78 +0.4
218,744 + GFF1573 0.78 -0.1
218,744 + GFF1573 0.78 +1.7
218,744 + GFF1573 0.78 +0.9
218,745 - GFF1573 0.78 +0.4
218,745 - GFF1573 0.78 +0.6
218,745 - GFF1573 0.78 +0.1
219,112 - +0.6
219,138 + +0.6
219,138 + +0.2
219,138 + -0.2
219,138 + -0.6
219,432 + GFF1574 0.25 -0.4
219,432 + GFF1574 0.25 +0.8
219,432 + GFF1574 0.25 -0.1
219,432 + GFF1574 0.25 -0.2
219,433 - GFF1574 0.25 +0.5
219,711 + GFF1574 0.39 -0.5
219,712 - GFF1574 0.39 -1.0
219,854 - GFF1574 0.47 -1.2
219,854 - GFF1574 0.47 -0.1
219,854 - GFF1574 0.47 +0.7
219,854 - GFF1574 0.47 -0.5
219,981 + GFF1574 0.54 -1.1
219,982 - GFF1574 0.54 -0.5
220,026 + GFF1574 0.56 +0.5
220,036 - GFF1574 0.57 -1.0
220,036 - GFF1574 0.57 -0.6
220,065 - GFF1574 0.58 -0.0
220,065 - GFF1574 0.58 +0.0
220,065 - GFF1574 0.58 -1.1
220,083 + GFF1574 0.59 +0.4
220,083 + GFF1574 0.59 -1.7
220,083 + GFF1574 0.59 +0.2
220,084 - GFF1574 0.59 -0.0
220,410 + GFF1574 0.76 -0.0
220,410 + GFF1574 0.76 -0.0
220,410 + GFF1574 0.76 -0.0
220,411 - GFF1574 0.77 -0.1
220,674 - +0.8
220,674 - -0.3
221,153 + GFF1575 0.19 +0.5
221,154 - GFF1575 0.19 -1.1
221,154 - GFF1575 0.19 -0.1
221,154 - GFF1575 0.19 -0.4
221,264 + GFF1575 0.26 -0.5
221,264 + GFF1575 0.26 -0.2
221,264 + GFF1575 0.26 -0.4
221,264 + GFF1575 0.26 +1.0
221,265 - GFF1575 0.26 -0.7
221,265 - GFF1575 0.26 -0.3
221,265 - GFF1575 0.26 +0.7
221,519 + GFF1575 0.42 +0.3
221,520 - GFF1575 0.42 +0.0
221,526 + GFF1575 0.43 -1.0
221,527 - GFF1575 0.43 -0.6
221,528 + GFF1575 0.43 +0.6
221,587 + GFF1575 0.46 -1.7
221,588 - GFF1575 0.46 -0.7
221,588 - GFF1575 0.46 -1.8
221,632 + GFF1575 0.49 +0.9
221,632 + GFF1575 0.49 -0.8
221,717 + GFF1575 0.55 -0.8
221,718 - GFF1575 0.55 -0.2
221,718 - GFF1575 0.55 -1.2

Or see this region's nucleotide sequence