Strain Fitness in Xanthobacter sp. DMC5 around GFF1571

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1570 and GFF1571 are separated by 94 nucleotidesGFF1571 and GFF1572 are separated by 407 nucleotidesGFF1572 and GFF1573 are separated by 3 nucleotides GFF1570 - Proline/betaine transporter, at 214,670 to 215,983 GFF1570 GFF1571 - hypothetical protein, at 216,078 to 217,184 GFF1571 GFF1572 - hypothetical protein, at 217,592 to 217,909 GFF1572 GFF1573 - Multidrug resistance protein MdtN, at 217,913 to 218,983 GFF1573 Position (kb) 216 217 218Strain fitness (log2 ratio) -1 0 1 2at 215.181 kb on + strand, within GFF1570at 215.182 kb on - strand, within GFF1570at 215.196 kb on + strand, within GFF1570at 215.197 kb on - strand, within GFF1570at 215.197 kb on - strand, within GFF1570at 215.197 kb on - strand, within GFF1570at 215.199 kb on + strand, within GFF1570at 215.200 kb on - strand, within GFF1570at 215.200 kb on - strand, within GFF1570at 215.200 kb on - strand, within GFF1570at 215.747 kb on + strand, within GFF1570at 215.851 kb on - strand, within GFF1570at 215.865 kb on + strandat 216.014 kb on + strandat 216.217 kb on + strand, within GFF1571at 216.274 kb on + strand, within GFF1571at 216.274 kb on + strand, within GFF1571at 216.275 kb on - strand, within GFF1571at 216.275 kb on - strand, within GFF1571at 216.275 kb on - strand, within GFF1571at 216.275 kb on - strand, within GFF1571at 216.275 kb on - strand, within GFF1571at 216.275 kb on - strand, within GFF1571at 216.275 kb on - strand, within GFF1571at 216.439 kb on + strand, within GFF1571at 216.440 kb on - strand, within GFF1571at 216.442 kb on + strand, within GFF1571at 216.554 kb on + strand, within GFF1571at 216.577 kb on + strand, within GFF1571at 216.577 kb on + strand, within GFF1571at 216.577 kb on + strand, within GFF1571at 216.577 kb on + strand, within GFF1571at 216.577 kb on + strand, within GFF1571at 216.577 kb on + strand, within GFF1571at 216.577 kb on + strand, within GFF1571at 216.578 kb on - strand, within GFF1571at 216.578 kb on - strand, within GFF1571at 216.578 kb on - strand, within GFF1571at 216.578 kb on - strand, within GFF1571at 216.646 kb on + strand, within GFF1571at 216.712 kb on + strand, within GFF1571at 216.712 kb on + strand, within GFF1571at 216.712 kb on + strand, within GFF1571at 216.713 kb on - strand, within GFF1571at 216.713 kb on - strand, within GFF1571at 216.713 kb on - strand, within GFF1571at 216.713 kb on - strand, within GFF1571at 216.713 kb on - strand, within GFF1571at 216.898 kb on + strand, within GFF1571at 216.899 kb on - strand, within GFF1571at 216.917 kb on + strand, within GFF1571at 216.917 kb on + strand, within GFF1571at 216.918 kb on - strand, within GFF1571at 216.918 kb on - strand, within GFF1571at 216.933 kb on + strand, within GFF1571at 216.934 kb on - strand, within GFF1571at 217.033 kb on + strand, within GFF1571at 217.091 kb on - strandat 217.091 kb on - strandat 217.091 kb on - strandat 217.091 kb on - strandat 217.102 kb on + strandat 217.103 kb on - strandat 217.141 kb on + strandat 217.165 kb on + strandat 217.166 kb on - strandat 217.355 kb on - strandat 217.506 kb on + strandat 217.506 kb on + strandat 217.507 kb on - strandat 217.736 kb on + strand, within GFF1572at 217.850 kb on + strand, within GFF1572at 217.850 kb on + strand, within GFF1572at 217.850 kb on + strand, within GFF1572at 217.851 kb on - strand, within GFF1572at 217.851 kb on - strand, within GFF1572at 217.853 kb on - strand, within GFF1572at 217.882 kb on - strandat 217.882 kb on - strandat 218.027 kb on + strand, within GFF1573at 218.027 kb on + strand, within GFF1573at 218.027 kb on + strand, within GFF1573at 218.027 kb on + strand, within GFF1573at 218.027 kb on + strand, within GFF1573at 218.027 kb on + strand, within GFF1573at 218.028 kb on - strand, within GFF1573at 218.028 kb on - strand, within GFF1573at 218.028 kb on - strand, within GFF1573at 218.028 kb on - strand, within GFF1573at 218.093 kb on - strand, within GFF1573at 218.093 kb on - strand, within GFF1573

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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215,181 + GFF1570 0.39 -0.5
215,182 - GFF1570 0.39 -0.1
215,196 + GFF1570 0.40 -0.7
215,197 - GFF1570 0.40 -1.1
215,197 - GFF1570 0.40 +0.1
215,197 - GFF1570 0.40 +0.9
215,199 + GFF1570 0.40 +1.1
215,200 - GFF1570 0.40 -0.3
215,200 - GFF1570 0.40 -0.7
215,200 - GFF1570 0.40 +0.4
215,747 + GFF1570 0.82 -1.2
215,851 - GFF1570 0.90 +0.4
215,865 + +0.1
216,014 + -0.4
216,217 + GFF1571 0.13 +1.3
216,274 + GFF1571 0.18 +0.4
216,274 + GFF1571 0.18 -0.3
216,275 - GFF1571 0.18 -0.4
216,275 - GFF1571 0.18 -0.2
216,275 - GFF1571 0.18 +0.6
216,275 - GFF1571 0.18 +0.9
216,275 - GFF1571 0.18 +0.1
216,275 - GFF1571 0.18 -0.8
216,275 - GFF1571 0.18 -0.3
216,439 + GFF1571 0.33 +0.6
216,440 - GFF1571 0.33 -0.5
216,442 + GFF1571 0.33 -0.5
216,554 + GFF1571 0.43 -1.3
216,577 + GFF1571 0.45 -0.4
216,577 + GFF1571 0.45 -1.0
216,577 + GFF1571 0.45 +0.9
216,577 + GFF1571 0.45 -0.2
216,577 + GFF1571 0.45 +0.8
216,577 + GFF1571 0.45 +0.1
216,577 + GFF1571 0.45 +0.3
216,578 - GFF1571 0.45 -1.0
216,578 - GFF1571 0.45 +1.2
216,578 - GFF1571 0.45 -0.5
216,578 - GFF1571 0.45 +1.1
216,646 + GFF1571 0.51 +0.8
216,712 + GFF1571 0.57 -0.4
216,712 + GFF1571 0.57 +0.8
216,712 + GFF1571 0.57 +2.2
216,713 - GFF1571 0.57 +0.4
216,713 - GFF1571 0.57 -0.1
216,713 - GFF1571 0.57 +0.1
216,713 - GFF1571 0.57 +0.6
216,713 - GFF1571 0.57 +0.1
216,898 + GFF1571 0.74 +0.0
216,899 - GFF1571 0.74 -0.3
216,917 + GFF1571 0.76 -1.0
216,917 + GFF1571 0.76 -0.6
216,918 - GFF1571 0.76 +0.8
216,918 - GFF1571 0.76 +0.0
216,933 + GFF1571 0.77 +1.2
216,934 - GFF1571 0.77 -0.6
217,033 + GFF1571 0.86 +0.4
217,091 - -0.3
217,091 - +0.3
217,091 - +0.9
217,091 - -0.8
217,102 + -0.2
217,103 - -0.7
217,141 + -1.3
217,165 + +0.8
217,166 - -0.8
217,355 - +0.1
217,506 + -0.6
217,506 + +0.9
217,507 - -1.7
217,736 + GFF1572 0.45 +0.3
217,850 + GFF1572 0.81 -1.7
217,850 + GFF1572 0.81 -0.9
217,850 + GFF1572 0.81 +0.8
217,851 - GFF1572 0.81 -0.0
217,851 - GFF1572 0.81 -0.1
217,853 - GFF1572 0.82 +0.1
217,882 - -0.2
217,882 - -0.6
218,027 + GFF1573 0.11 +0.5
218,027 + GFF1573 0.11 -0.1
218,027 + GFF1573 0.11 -0.9
218,027 + GFF1573 0.11 +1.2
218,027 + GFF1573 0.11 +0.2
218,027 + GFF1573 0.11 -1.2
218,028 - GFF1573 0.11 -0.7
218,028 - GFF1573 0.11 -0.5
218,028 - GFF1573 0.11 +0.1
218,028 - GFF1573 0.11 -0.3
218,093 - GFF1573 0.17 +0.5
218,093 - GFF1573 0.17 +1.5

Or see this region's nucleotide sequence