Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1567 and GFF1568 are separated by 61 nucleotides GFF1568 and GFF1569 are separated by 730 nucleotides
GFF1567 - Putative multidrug resistance protein MdtD, at 210,234 to 211,889
GFF1567
GFF1568 - Glutaminase 1, at 211,951 to 212,946
GFF1568
GFF1569 - hypothetical protein, at 213,677 to 214,648
GFF1569
Position (kb) 211
212
213 Strain fitness (log2 ratio) -2
-1
0
1
2 at 211.469 kb on - strand, within GFF1567 at 211.617 kb on + strand, within GFF1567 at 211.618 kb on - strand, within GFF1567 at 211.687 kb on + strand, within GFF1567 at 211.687 kb on + strand, within GFF1567 at 211.687 kb on + strand, within GFF1567 at 211.687 kb on + strand, within GFF1567 at 211.687 kb on + strand, within GFF1567 at 211.688 kb on - strand, within GFF1567 at 211.688 kb on - strand, within GFF1567 at 211.688 kb on - strand, within GFF1567 at 211.688 kb on - strand, within GFF1567 at 212.003 kb on + strand at 212.003 kb on + strand at 212.004 kb on - strand at 212.004 kb on - strand at 212.141 kb on + strand, within GFF1568 at 212.141 kb on + strand, within GFF1568 at 212.165 kb on + strand, within GFF1568 at 212.198 kb on + strand, within GFF1568 at 212.199 kb on - strand, within GFF1568 at 212.199 kb on - strand, within GFF1568 at 212.199 kb on - strand, within GFF1568 at 212.245 kb on + strand, within GFF1568 at 212.321 kb on + strand, within GFF1568 at 212.321 kb on + strand, within GFF1568 at 212.321 kb on + strand, within GFF1568 at 212.322 kb on - strand, within GFF1568 at 212.322 kb on - strand, within GFF1568 at 212.322 kb on - strand, within GFF1568 at 212.351 kb on + strand, within GFF1568 at 212.351 kb on + strand, within GFF1568 at 212.352 kb on - strand, within GFF1568 at 212.352 kb on - strand, within GFF1568 at 212.423 kb on + strand, within GFF1568 at 212.423 kb on + strand, within GFF1568 at 212.423 kb on + strand, within GFF1568 at 212.423 kb on + strand, within GFF1568 at 212.423 kb on + strand, within GFF1568 at 212.424 kb on - strand, within GFF1568 at 212.424 kb on - strand, within GFF1568 at 212.598 kb on - strand, within GFF1568 at 212.738 kb on + strand, within GFF1568 at 212.738 kb on + strand, within GFF1568 at 212.738 kb on + strand, within GFF1568 at 212.739 kb on - strand, within GFF1568 at 212.739 kb on - strand, within GFF1568 at 212.910 kb on + strand at 212.910 kb on + strand at 212.910 kb on + strand at 212.911 kb on - strand at 212.911 kb on - strand at 212.911 kb on - strand at 212.912 kb on + strand at 212.912 kb on + strand at 213.060 kb on - strand at 213.124 kb on - strand at 213.197 kb on + strand at 213.197 kb on + strand at 213.197 kb on + strand at 213.468 kb on - strand at 213.504 kb on - strand at 213.506 kb on - strand at 213.549 kb on + strand at 213.572 kb on + strand at 213.573 kb on - strand at 213.586 kb on + strand at 213.587 kb on - strand at 213.745 kb on - strand at 213.843 kb on + strand, within GFF1569 at 213.866 kb on + strand, within GFF1569 at 213.866 kb on + strand, within GFF1569 at 213.867 kb on - strand, within GFF1569 at 213.867 kb on - strand, within GFF1569 at 213.926 kb on + strand, within GFF1569 at 213.926 kb on + strand, within GFF1569 at 213.926 kb on + strand, within GFF1569 at 213.926 kb on + strand, within GFF1569 at 213.927 kb on - strand, within GFF1569 at 213.927 kb on - strand, within GFF1569 at 213.927 kb on - strand, within GFF1569
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 211,469 - GFF1567 0.75 -0.2 211,617 + GFF1567 0.84 +0.1 211,618 - GFF1567 0.84 +0.2 211,687 + GFF1567 0.88 +0.0 211,687 + GFF1567 0.88 -0.3 211,687 + GFF1567 0.88 +0.2 211,687 + GFF1567 0.88 -0.0 211,687 + GFF1567 0.88 +0.0 211,688 - GFF1567 0.88 -0.4 211,688 - GFF1567 0.88 -0.3 211,688 - GFF1567 0.88 +0.5 211,688 - GFF1567 0.88 +0.1 212,003 + -1.7 212,003 + +0.2 212,004 - +0.2 212,004 - +0.6 212,141 + GFF1568 0.19 +0.0 212,141 + GFF1568 0.19 -0.8 212,165 + GFF1568 0.21 -0.8 212,198 + GFF1568 0.25 -0.3 212,199 - GFF1568 0.25 +0.2 212,199 - GFF1568 0.25 -0.3 212,199 - GFF1568 0.25 +0.1 212,245 + GFF1568 0.30 +0.2 212,321 + GFF1568 0.37 +0.2 212,321 + GFF1568 0.37 -0.7 212,321 + GFF1568 0.37 +0.6 212,322 - GFF1568 0.37 -0.9 212,322 - GFF1568 0.37 -0.8 212,322 - GFF1568 0.37 +0.0 212,351 + GFF1568 0.40 -0.5 212,351 + GFF1568 0.40 -0.4 212,352 - GFF1568 0.40 +0.1 212,352 - GFF1568 0.40 +0.3 212,423 + GFF1568 0.47 +0.2 212,423 + GFF1568 0.47 -0.9 212,423 + GFF1568 0.47 -1.1 212,423 + GFF1568 0.47 -0.8 212,423 + GFF1568 0.47 -0.6 212,424 - GFF1568 0.47 -0.4 212,424 - GFF1568 0.47 -2.2 212,598 - GFF1568 0.65 -0.8 212,738 + GFF1568 0.79 -0.4 212,738 + GFF1568 0.79 -0.1 212,738 + GFF1568 0.79 +0.5 212,739 - GFF1568 0.79 -0.5 212,739 - GFF1568 0.79 +0.3 212,910 + -0.9 212,910 + -0.9 212,910 + +0.4 212,911 - +0.0 212,911 - +0.4 212,911 - -0.5 212,912 + -0.5 212,912 + +0.7 213,060 - -0.3 213,124 - +0.8 213,197 + -0.1 213,197 + -0.1 213,197 + -0.2 213,468 - +0.1 213,504 - +2.1 213,506 - +0.5 213,549 + -0.4 213,572 + +0.5 213,573 - -0.5 213,586 + -0.4 213,587 - +0.3 213,745 - +0.1 213,843 + GFF1569 0.17 -0.2 213,866 + GFF1569 0.19 -0.2 213,866 + GFF1569 0.19 +0.1 213,867 - GFF1569 0.20 +0.7 213,867 - GFF1569 0.20 -0.1 213,926 + GFF1569 0.26 +0.4 213,926 + GFF1569 0.26 -1.5 213,926 + GFF1569 0.26 +0.4 213,926 + GFF1569 0.26 -0.1 213,927 - GFF1569 0.26 -0.1 213,927 - GFF1569 0.26 -0.1 213,927 - GFF1569 0.26 +0.0
Or see this region's nucleotide sequence