Strain Fitness in Xanthobacter sp. DMC5 around GFF1556

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1555 and GFF1556 are separated by 50 nucleotidesGFF1556 and GFF1557 overlap by 8 nucleotides GFF1555 - hypothetical protein, at 193,817 to 195,145 GFF1555 GFF1556 - Oligosaccharides import ATP-binding protein MsmX, at 195,196 to 196,290 GFF1556 GFF1557 - Xylulose kinase, at 196,283 to 197,839 GFF1557 Position (kb) 195 196 197Strain fitness (log2 ratio) -2 -1 0 1at 194.214 kb on + strand, within GFF1555at 194.215 kb on - strand, within GFF1555at 194.215 kb on - strand, within GFF1555at 194.256 kb on + strand, within GFF1555at 194.256 kb on + strand, within GFF1555at 194.256 kb on + strand, within GFF1555at 194.256 kb on + strand, within GFF1555at 194.257 kb on - strand, within GFF1555at 194.257 kb on - strand, within GFF1555at 194.271 kb on + strand, within GFF1555at 194.271 kb on + strand, within GFF1555at 194.271 kb on + strand, within GFF1555at 194.272 kb on - strand, within GFF1555at 194.272 kb on - strand, within GFF1555at 194.328 kb on + strand, within GFF1555at 194.328 kb on + strand, within GFF1555at 194.328 kb on + strand, within GFF1555at 194.328 kb on + strand, within GFF1555at 194.415 kb on + strand, within GFF1555at 194.416 kb on - strand, within GFF1555at 194.416 kb on - strand, within GFF1555at 194.439 kb on + strand, within GFF1555at 194.439 kb on + strand, within GFF1555at 194.440 kb on - strand, within GFF1555at 194.440 kb on - strand, within GFF1555at 194.440 kb on - strand, within GFF1555at 194.701 kb on - strand, within GFF1555at 194.701 kb on - strand, within GFF1555at 194.706 kb on + strand, within GFF1555at 194.719 kb on - strand, within GFF1555at 194.763 kb on + strand, within GFF1555at 194.764 kb on - strand, within GFF1555at 194.764 kb on - strand, within GFF1555at 194.764 kb on - strand, within GFF1555at 194.764 kb on - strand, within GFF1555at 194.853 kb on + strand, within GFF1555at 194.949 kb on + strand, within GFF1555at 194.950 kb on - strand, within GFF1555at 194.950 kb on - strand, within GFF1555at 195.306 kb on + strand, within GFF1556at 195.306 kb on + strand, within GFF1556at 195.626 kb on + strand, within GFF1556at 195.626 kb on + strand, within GFF1556at 195.626 kb on + strand, within GFF1556at 195.626 kb on + strand, within GFF1556at 195.626 kb on + strand, within GFF1556at 195.627 kb on - strand, within GFF1556at 195.627 kb on - strand, within GFF1556at 195.627 kb on - strand, within GFF1556at 195.627 kb on - strand, within GFF1556at 195.725 kb on + strand, within GFF1556at 195.725 kb on + strand, within GFF1556at 195.725 kb on + strand, within GFF1556at 195.726 kb on - strand, within GFF1556at 195.726 kb on - strand, within GFF1556at 195.726 kb on - strand, within GFF1556at 195.726 kb on - strand, within GFF1556at 195.726 kb on - strand, within GFF1556at 196.014 kb on - strand, within GFF1556at 196.014 kb on - strand, within GFF1556at 196.041 kb on - strand, within GFF1556at 196.041 kb on - strand, within GFF1556at 196.041 kb on - strand, within GFF1556at 196.041 kb on - strand, within GFF1556at 196.041 kb on - strand, within GFF1556at 196.254 kb on - strandat 196.254 kb on - strandat 196.254 kb on - strandat 196.254 kb on - strandat 196.337 kb on + strandat 196.337 kb on + strandat 196.337 kb on + strandat 196.392 kb on + strandat 196.392 kb on + strandat 196.413 kb on + strandat 196.413 kb on + strandat 196.413 kb on + strandat 196.491 kb on + strand, within GFF1557at 196.678 kb on - strand, within GFF1557at 196.689 kb on + strand, within GFF1557at 196.704 kb on + strand, within GFF1557at 196.806 kb on + strand, within GFF1557at 196.806 kb on + strand, within GFF1557at 196.807 kb on - strand, within GFF1557at 196.965 kb on + strand, within GFF1557at 196.965 kb on + strand, within GFF1557at 196.966 kb on - strand, within GFF1557at 196.992 kb on + strand, within GFF1557at 196.992 kb on + strand, within GFF1557at 197.064 kb on - strand, within GFF1557at 197.064 kb on - strand, within GFF1557at 197.100 kb on + strand, within GFF1557at 197.192 kb on + strand, within GFF1557

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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194,214 + GFF1555 0.30 -0.7
194,215 - GFF1555 0.30 +0.6
194,215 - GFF1555 0.30 -0.2
194,256 + GFF1555 0.33 -0.9
194,256 + GFF1555 0.33 +0.0
194,256 + GFF1555 0.33 -0.4
194,256 + GFF1555 0.33 +0.3
194,257 - GFF1555 0.33 -0.5
194,257 - GFF1555 0.33 +0.4
194,271 + GFF1555 0.34 -0.3
194,271 + GFF1555 0.34 +0.4
194,271 + GFF1555 0.34 -1.3
194,272 - GFF1555 0.34 -0.5
194,272 - GFF1555 0.34 -0.5
194,328 + GFF1555 0.38 +1.4
194,328 + GFF1555 0.38 +0.1
194,328 + GFF1555 0.38 -0.3
194,328 + GFF1555 0.38 -0.3
194,415 + GFF1555 0.45 -0.1
194,416 - GFF1555 0.45 -0.9
194,416 - GFF1555 0.45 +0.4
194,439 + GFF1555 0.47 -0.8
194,439 + GFF1555 0.47 +0.2
194,440 - GFF1555 0.47 -2.6
194,440 - GFF1555 0.47 +0.0
194,440 - GFF1555 0.47 -0.0
194,701 - GFF1555 0.67 -1.0
194,701 - GFF1555 0.67 -0.1
194,706 + GFF1555 0.67 +0.2
194,719 - GFF1555 0.68 -0.0
194,763 + GFF1555 0.71 +0.3
194,764 - GFF1555 0.71 +0.8
194,764 - GFF1555 0.71 +0.5
194,764 - GFF1555 0.71 +0.0
194,764 - GFF1555 0.71 -0.3
194,853 + GFF1555 0.78 -1.0
194,949 + GFF1555 0.85 +0.4
194,950 - GFF1555 0.85 +0.9
194,950 - GFF1555 0.85 -0.0
195,306 + GFF1556 0.10 +0.3
195,306 + GFF1556 0.10 +0.3
195,626 + GFF1556 0.39 +0.3
195,626 + GFF1556 0.39 -0.4
195,626 + GFF1556 0.39 -0.2
195,626 + GFF1556 0.39 -0.8
195,626 + GFF1556 0.39 +1.2
195,627 - GFF1556 0.39 -1.4
195,627 - GFF1556 0.39 +0.3
195,627 - GFF1556 0.39 -0.4
195,627 - GFF1556 0.39 +0.1
195,725 + GFF1556 0.48 -1.6
195,725 + GFF1556 0.48 +0.0
195,725 + GFF1556 0.48 -1.4
195,726 - GFF1556 0.48 +0.2
195,726 - GFF1556 0.48 +1.2
195,726 - GFF1556 0.48 +0.6
195,726 - GFF1556 0.48 -0.2
195,726 - GFF1556 0.48 +0.3
196,014 - GFF1556 0.75 -0.5
196,014 - GFF1556 0.75 -0.2
196,041 - GFF1556 0.77 -0.1
196,041 - GFF1556 0.77 +0.0
196,041 - GFF1556 0.77 -0.9
196,041 - GFF1556 0.77 +0.1
196,041 - GFF1556 0.77 +0.4
196,254 - -0.4
196,254 - -0.5
196,254 - +1.4
196,254 - +0.6
196,337 + +0.7
196,337 + +0.3
196,337 + -0.5
196,392 + -0.1
196,392 + +0.8
196,413 + +0.2
196,413 + +0.6
196,413 + +0.2
196,491 + GFF1557 0.13 -0.3
196,678 - GFF1557 0.25 +1.5
196,689 + GFF1557 0.26 -0.1
196,704 + GFF1557 0.27 +0.1
196,806 + GFF1557 0.34 -0.3
196,806 + GFF1557 0.34 +1.3
196,807 - GFF1557 0.34 +0.3
196,965 + GFF1557 0.44 -0.5
196,965 + GFF1557 0.44 -0.3
196,966 - GFF1557 0.44 +0.9
196,992 + GFF1557 0.46 -1.8
196,992 + GFF1557 0.46 +0.1
197,064 - GFF1557 0.50 +0.1
197,064 - GFF1557 0.50 -1.8
197,100 + GFF1557 0.52 -1.2
197,192 + GFF1557 0.58 -0.4

Or see this region's nucleotide sequence