Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1526 and GFF1527 overlap by 8 nucleotides GFF1527 and GFF1528 are separated by 13 nucleotides GFF1528 and GFF1529 are separated by 187 nucleotides GFF1529 and GFF1530 are separated by 4 nucleotides
GFF1526 - Lipopolysaccharide export system ATP-binding protein LptB, at 165,927 to 166,697
GFF1526
GFF1527 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 166,690 to 167,418
GFF1527
GFF1528 - putative sulfate transporter, at 167,432 to 169,147
GFF1528
GFF1529 - hypothetical protein, at 169,335 to 169,829
GFF1529
GFF1530 - hypothetical protein, at 169,834 to 171,069
GFF1530
Position (kb) 167
168
169
170 Strain fitness (log2 ratio) -2
-1
0
1
2 at 166.552 kb on + strand, within GFF1526 at 166.553 kb on - strand, within GFF1526 at 166.674 kb on + strand at 166.674 kb on + strand at 166.674 kb on + strand at 166.993 kb on + strand, within GFF1527 at 166.994 kb on - strand, within GFF1527 at 167.041 kb on + strand, within GFF1527 at 167.041 kb on + strand, within GFF1527 at 167.041 kb on + strand, within GFF1527 at 167.042 kb on - strand, within GFF1527 at 167.080 kb on + strand, within GFF1527 at 167.081 kb on - strand, within GFF1527 at 167.296 kb on + strand, within GFF1527 at 167.297 kb on - strand, within GFF1527 at 167.297 kb on - strand, within GFF1527 at 167.297 kb on - strand, within GFF1527 at 167.297 kb on - strand, within GFF1527 at 167.297 kb on - strand, within GFF1527 at 167.297 kb on - strand, within GFF1527 at 167.297 kb on - strand, within GFF1527 at 167.297 kb on - strand, within GFF1527 at 167.297 kb on - strand, within GFF1527 at 167.298 kb on - strand, within GFF1527 at 167.302 kb on + strand, within GFF1527 at 167.302 kb on + strand, within GFF1527 at 167.302 kb on + strand, within GFF1527 at 167.303 kb on - strand, within GFF1527 at 167.303 kb on - strand, within GFF1527 at 167.303 kb on - strand, within GFF1527 at 167.303 kb on - strand, within GFF1527 at 167.303 kb on - strand, within GFF1527 at 167.303 kb on - strand, within GFF1527 at 167.380 kb on + strand at 167.381 kb on - strand at 167.758 kb on + strand, within GFF1528 at 167.829 kb on + strand, within GFF1528 at 167.830 kb on - strand, within GFF1528 at 167.877 kb on + strand, within GFF1528 at 168.008 kb on + strand, within GFF1528 at 168.009 kb on - strand, within GFF1528 at 168.009 kb on - strand, within GFF1528 at 168.659 kb on + strand, within GFF1528 at 168.659 kb on + strand, within GFF1528 at 168.660 kb on - strand, within GFF1528 at 168.660 kb on - strand, within GFF1528 at 168.660 kb on - strand, within GFF1528 at 168.786 kb on + strand, within GFF1528 at 168.786 kb on + strand, within GFF1528 at 168.786 kb on + strand, within GFF1528 at 168.790 kb on - strand, within GFF1528 at 168.966 kb on + strand, within GFF1528 at 168.967 kb on - strand, within GFF1528 at 168.967 kb on - strand, within GFF1528 at 168.967 kb on - strand, within GFF1528 at 169.084 kb on - strand at 169.286 kb on - strand at 169.505 kb on + strand, within GFF1529 at 169.533 kb on + strand, within GFF1529 at 169.533 kb on + strand, within GFF1529 at 169.533 kb on + strand, within GFF1529 at 169.677 kb on + strand, within GFF1529 at 169.677 kb on + strand, within GFF1529 at 169.835 kb on + strand at 169.835 kb on + strand at 169.836 kb on - strand at 169.910 kb on + strand at 169.910 kb on + strand at 169.910 kb on + strand at 169.910 kb on + strand at 169.910 kb on + strand at 169.911 kb on - strand at 169.965 kb on + strand, within GFF1530 at 169.965 kb on + strand, within GFF1530 at 169.965 kb on + strand, within GFF1530 at 169.965 kb on + strand, within GFF1530 at 169.965 kb on + strand, within GFF1530 at 169.966 kb on - strand, within GFF1530 at 169.966 kb on - strand, within GFF1530 at 170.099 kb on + strand, within GFF1530 at 170.099 kb on + strand, within GFF1530 at 170.117 kb on + strand, within GFF1530 at 170.117 kb on + strand, within GFF1530 at 170.118 kb on - strand, within GFF1530 at 170.118 kb on - strand, within GFF1530 at 170.137 kb on - strand, within GFF1530
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 166,552 + GFF1526 0.81 -0.4 166,553 - GFF1526 0.81 +0.0 166,674 + -0.8 166,674 + -0.3 166,674 + -0.3 166,993 + GFF1527 0.42 -1.8 166,994 - GFF1527 0.42 -0.0 167,041 + GFF1527 0.48 -0.0 167,041 + GFF1527 0.48 -0.5 167,041 + GFF1527 0.48 -1.5 167,042 - GFF1527 0.48 -0.3 167,080 + GFF1527 0.53 -0.5 167,081 - GFF1527 0.54 +0.6 167,296 + GFF1527 0.83 +0.1 167,297 - GFF1527 0.83 +1.4 167,297 - GFF1527 0.83 -0.5 167,297 - GFF1527 0.83 -0.1 167,297 - GFF1527 0.83 -0.1 167,297 - GFF1527 0.83 -0.2 167,297 - GFF1527 0.83 -0.2 167,297 - GFF1527 0.83 +1.9 167,297 - GFF1527 0.83 +0.0 167,297 - GFF1527 0.83 -0.5 167,298 - GFF1527 0.83 -0.4 167,302 + GFF1527 0.84 +1.9 167,302 + GFF1527 0.84 -1.8 167,302 + GFF1527 0.84 +0.1 167,303 - GFF1527 0.84 -0.2 167,303 - GFF1527 0.84 -1.1 167,303 - GFF1527 0.84 -0.3 167,303 - GFF1527 0.84 +0.2 167,303 - GFF1527 0.84 +0.5 167,303 - GFF1527 0.84 +0.4 167,380 + -0.0 167,381 - +0.3 167,758 + GFF1528 0.19 -0.8 167,829 + GFF1528 0.23 -0.3 167,830 - GFF1528 0.23 -0.0 167,877 + GFF1528 0.26 +0.1 168,008 + GFF1528 0.34 -0.1 168,009 - GFF1528 0.34 +0.7 168,009 - GFF1528 0.34 +0.8 168,659 + GFF1528 0.72 -0.4 168,659 + GFF1528 0.72 -0.5 168,660 - GFF1528 0.72 -0.8 168,660 - GFF1528 0.72 +0.6 168,660 - GFF1528 0.72 +0.4 168,786 + GFF1528 0.79 +0.3 168,786 + GFF1528 0.79 +1.7 168,786 + GFF1528 0.79 +0.2 168,790 - GFF1528 0.79 -0.9 168,966 + GFF1528 0.89 -0.5 168,967 - GFF1528 0.89 +0.8 168,967 - GFF1528 0.89 +0.8 168,967 - GFF1528 0.89 -0.7 169,084 - -0.3 169,286 - +0.4 169,505 + GFF1529 0.34 -1.2 169,533 + GFF1529 0.40 +0.6 169,533 + GFF1529 0.40 -0.7 169,533 + GFF1529 0.40 -0.9 169,677 + GFF1529 0.69 -0.9 169,677 + GFF1529 0.69 +1.0 169,835 + +1.2 169,835 + +1.2 169,836 - +0.1 169,910 + -0.4 169,910 + +1.7 169,910 + +0.9 169,910 + -0.9 169,910 + -0.8 169,911 - -1.0 169,965 + GFF1530 0.11 -0.1 169,965 + GFF1530 0.11 +0.1 169,965 + GFF1530 0.11 -0.5 169,965 + GFF1530 0.11 +0.9 169,965 + GFF1530 0.11 +0.4 169,966 - GFF1530 0.11 +0.5 169,966 - GFF1530 0.11 -0.1 170,099 + GFF1530 0.21 +0.1 170,099 + GFF1530 0.21 +0.3 170,117 + GFF1530 0.23 +0.5 170,117 + GFF1530 0.23 +0.6 170,118 - GFF1530 0.23 -0.8 170,118 - GFF1530 0.23 +0.3 170,137 - GFF1530 0.25 +0.4
Or see this region's nucleotide sequence