Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1521 and GFF1522 are separated by 13 nucleotides GFF1522 and GFF1523 overlap by 1 nucleotides GFF1523 and GFF1524 are separated by 28 nucleotides GFF1524 and GFF1525 overlap by 4 nucleotides
GFF1521 - putative nicotinate-nucleotide pyrophosphorylase [carboxylating], at 161,335 to 162,225
GFF1521
GFF1522 - hypothetical protein, at 162,239 to 163,006
GFF1522
GFF1523 - Leu/Ile/Val/Thr-binding protein, at 163,006 to 164,136
GFF1523
GFF1524 - High-affinity branched-chain amino acid transport system permease protein LivH, at 164,165 to 165,049
GFF1524
GFF1525 - hypothetical protein, at 165,046 to 165,927
GFF1525
Position (kb) 163
164
165 Strain fitness (log2 ratio) -1
0
1
2 at 162.080 kb on + strand, within GFF1521 at 162.080 kb on + strand, within GFF1521 at 162.311 kb on + strand at 162.311 kb on + strand at 162.311 kb on + strand at 162.419 kb on + strand, within GFF1522 at 162.422 kb on + strand, within GFF1522 at 162.422 kb on + strand, within GFF1522 at 162.431 kb on + strand, within GFF1522 at 162.431 kb on + strand, within GFF1522 at 162.431 kb on + strand, within GFF1522 at 162.432 kb on - strand, within GFF1522 at 162.677 kb on + strand, within GFF1522 at 162.678 kb on - strand, within GFF1522 at 162.679 kb on + strand, within GFF1522 at 162.679 kb on + strand, within GFF1522 at 162.705 kb on - strand, within GFF1522 at 162.921 kb on + strand, within GFF1522 at 162.922 kb on - strand, within GFF1522 at 162.922 kb on - strand, within GFF1522 at 162.952 kb on + strand at 162.953 kb on - strand at 162.953 kb on - strand at 162.967 kb on + strand at 163.031 kb on + strand at 163.031 kb on + strand at 163.032 kb on - strand at 163.135 kb on + strand, within GFF1523 at 163.420 kb on + strand, within GFF1523 at 163.421 kb on - strand, within GFF1523 at 163.489 kb on + strand, within GFF1523 at 163.489 kb on + strand, within GFF1523 at 163.489 kb on + strand, within GFF1523 at 163.516 kb on + strand, within GFF1523 at 163.516 kb on + strand, within GFF1523 at 163.516 kb on + strand, within GFF1523 at 163.630 kb on + strand, within GFF1523 at 163.631 kb on - strand, within GFF1523 at 163.889 kb on - strand, within GFF1523 at 163.889 kb on - strand, within GFF1523 at 163.889 kb on - strand, within GFF1523 at 163.900 kb on + strand, within GFF1523 at 163.901 kb on - strand, within GFF1523 at 164.216 kb on + strand at 164.216 kb on + strand at 164.217 kb on - strand at 164.306 kb on + strand, within GFF1524 at 164.306 kb on + strand, within GFF1524 at 164.307 kb on - strand, within GFF1524 at 164.589 kb on + strand, within GFF1524 at 164.589 kb on + strand, within GFF1524 at 164.748 kb on - strand, within GFF1524 at 164.942 kb on + strand, within GFF1524 at 164.942 kb on + strand, within GFF1524 at 164.942 kb on + strand, within GFF1524 at 164.942 kb on + strand, within GFF1524 at 164.942 kb on + strand, within GFF1524 at 164.943 kb on - strand, within GFF1524 at 164.943 kb on - strand, within GFF1524 at 164.943 kb on - strand, within GFF1524 at 164.943 kb on - strand, within GFF1524 at 164.943 kb on - strand, within GFF1524 at 165.079 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 162,080 + GFF1521 0.84 +0.8 162,080 + GFF1521 0.84 -0.6 162,311 + -0.6 162,311 + -0.1 162,311 + +0.3 162,419 + GFF1522 0.23 -1.0 162,422 + GFF1522 0.24 +1.4 162,422 + GFF1522 0.24 +0.9 162,431 + GFF1522 0.25 +1.2 162,431 + GFF1522 0.25 +0.2 162,431 + GFF1522 0.25 -0.3 162,432 - GFF1522 0.25 +0.2 162,677 + GFF1522 0.57 +0.5 162,678 - GFF1522 0.57 -0.3 162,679 + GFF1522 0.57 +0.9 162,679 + GFF1522 0.57 +0.6 162,705 - GFF1522 0.61 +0.4 162,921 + GFF1522 0.89 +0.3 162,922 - GFF1522 0.89 -0.3 162,922 - GFF1522 0.89 -0.7 162,952 + -0.9 162,953 - -0.1 162,953 - +0.5 162,967 + +0.4 163,031 + -0.3 163,031 + +0.2 163,032 - +0.1 163,135 + GFF1523 0.11 +0.7 163,420 + GFF1523 0.37 +0.3 163,421 - GFF1523 0.37 -0.1 163,489 + GFF1523 0.43 -0.3 163,489 + GFF1523 0.43 +0.2 163,489 + GFF1523 0.43 -0.4 163,516 + GFF1523 0.45 +0.2 163,516 + GFF1523 0.45 -0.6 163,516 + GFF1523 0.45 -0.5 163,630 + GFF1523 0.55 +0.5 163,631 - GFF1523 0.55 -0.7 163,889 - GFF1523 0.78 +1.1 163,889 - GFF1523 0.78 -0.8 163,889 - GFF1523 0.78 +0.5 163,900 + GFF1523 0.79 +0.9 163,901 - GFF1523 0.79 -1.1 164,216 + +1.2 164,216 + -0.4 164,217 - +0.6 164,306 + GFF1524 0.16 +0.1 164,306 + GFF1524 0.16 +0.9 164,307 - GFF1524 0.16 +1.9 164,589 + GFF1524 0.48 +0.3 164,589 + GFF1524 0.48 -0.8 164,748 - GFF1524 0.66 +0.3 164,942 + GFF1524 0.88 +0.9 164,942 + GFF1524 0.88 -0.1 164,942 + GFF1524 0.88 -1.1 164,942 + GFF1524 0.88 +0.3 164,942 + GFF1524 0.88 -0.9 164,943 - GFF1524 0.88 +0.4 164,943 - GFF1524 0.88 -0.1 164,943 - GFF1524 0.88 -0.6 164,943 - GFF1524 0.88 -0.3 164,943 - GFF1524 0.88 -0.5 165,079 + -0.1
Or see this region's nucleotide sequence