Strain Fitness in Xanthobacter sp. DMC5 around GFF1487

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1485 and GFF1486 overlap by 4 nucleotidesGFF1486 and GFF1487 are separated by 23 nucleotidesGFF1487 and GFF1488 are separated by 117 nucleotides GFF1485 - Lactose transport system permease protein LacG, at 123,587 to 124,453 GFF1485 GFF1486 - sn-glycerol-3-phosphate transport system permease protein UgpA, at 124,450 to 125,331 GFF1486 GFF1487 - sn-glycerol-3-phosphate-binding periplasmic protein UgpB, at 125,355 to 126,707 GFF1487 GFF1488 - hypothetical protein, at 126,825 to 128,528 GFF1488 Position (kb) 125 126 127Strain fitness (log2 ratio) -2 -1 0 1at 124.574 kb on + strand, within GFF1486at 124.575 kb on - strand, within GFF1486at 124.575 kb on - strand, within GFF1486at 124.575 kb on - strand, within GFF1486at 124.575 kb on - strand, within GFF1486at 124.662 kb on - strand, within GFF1486at 124.755 kb on + strand, within GFF1486at 124.820 kb on + strand, within GFF1486at 124.821 kb on - strand, within GFF1486at 124.873 kb on - strand, within GFF1486at 124.873 kb on - strand, within GFF1486at 124.873 kb on - strand, within GFF1486at 124.887 kb on - strand, within GFF1486at 124.991 kb on + strand, within GFF1486at 124.991 kb on + strand, within GFF1486at 125.132 kb on + strand, within GFF1486at 125.132 kb on + strand, within GFF1486at 125.133 kb on - strand, within GFF1486at 125.133 kb on - strand, within GFF1486at 125.176 kb on - strand, within GFF1486at 125.314 kb on + strandat 125.314 kb on + strandat 125.314 kb on + strandat 125.314 kb on + strandat 125.315 kb on - strandat 125.315 kb on - strandat 125.356 kb on + strandat 125.356 kb on + strandat 125.357 kb on - strandat 125.584 kb on + strand, within GFF1487at 125.585 kb on - strand, within GFF1487at 125.585 kb on - strand, within GFF1487at 125.585 kb on - strand, within GFF1487at 125.587 kb on + strand, within GFF1487at 125.588 kb on - strand, within GFF1487at 125.635 kb on + strand, within GFF1487at 125.635 kb on + strand, within GFF1487at 125.636 kb on - strand, within GFF1487at 125.710 kb on + strand, within GFF1487at 125.711 kb on - strand, within GFF1487at 125.711 kb on - strand, within GFF1487at 125.803 kb on + strand, within GFF1487at 125.803 kb on + strand, within GFF1487at 125.935 kb on + strand, within GFF1487at 125.935 kb on + strand, within GFF1487at 125.935 kb on + strand, within GFF1487at 125.936 kb on - strand, within GFF1487at 126.090 kb on + strand, within GFF1487at 126.295 kb on + strand, within GFF1487at 126.298 kb on + strand, within GFF1487at 126.298 kb on + strand, within GFF1487at 126.299 kb on - strand, within GFF1487at 126.299 kb on - strand, within GFF1487at 126.319 kb on + strand, within GFF1487at 126.319 kb on + strand, within GFF1487at 126.319 kb on + strand, within GFF1487at 126.319 kb on + strand, within GFF1487at 126.320 kb on - strand, within GFF1487at 126.320 kb on - strand, within GFF1487at 126.320 kb on - strand, within GFF1487at 126.418 kb on + strand, within GFF1487at 126.418 kb on + strand, within GFF1487at 126.418 kb on + strand, within GFF1487at 126.418 kb on + strand, within GFF1487at 126.419 kb on - strand, within GFF1487at 126.419 kb on - strand, within GFF1487at 126.419 kb on - strand, within GFF1487at 126.419 kb on - strand, within GFF1487at 126.419 kb on - strand, within GFF1487at 126.419 kb on - strand, within GFF1487at 126.487 kb on + strand, within GFF1487at 126.877 kb on + strandat 126.877 kb on + strandat 126.878 kb on - strandat 126.878 kb on - strandat 126.878 kb on - strandat 127.212 kb on + strand, within GFF1488at 127.215 kb on - strand, within GFF1488

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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124,574 + GFF1486 0.14 -0.4
124,575 - GFF1486 0.14 -0.7
124,575 - GFF1486 0.14 -0.3
124,575 - GFF1486 0.14 +0.2
124,575 - GFF1486 0.14 +0.4
124,662 - GFF1486 0.24 +0.6
124,755 + GFF1486 0.35 +0.2
124,820 + GFF1486 0.42 -0.1
124,821 - GFF1486 0.42 +1.2
124,873 - GFF1486 0.48 +0.0
124,873 - GFF1486 0.48 -0.6
124,873 - GFF1486 0.48 +0.1
124,887 - GFF1486 0.50 -0.5
124,991 + GFF1486 0.61 +0.4
124,991 + GFF1486 0.61 -1.5
125,132 + GFF1486 0.77 -0.1
125,132 + GFF1486 0.77 -0.1
125,133 - GFF1486 0.77 +0.7
125,133 - GFF1486 0.77 -0.0
125,176 - GFF1486 0.82 +0.0
125,314 + +0.7
125,314 + +0.1
125,314 + +0.1
125,314 + +0.2
125,315 - -0.5
125,315 - -0.7
125,356 + -0.6
125,356 + -0.1
125,357 - +0.1
125,584 + GFF1487 0.17 -2.0
125,585 - GFF1487 0.17 +0.6
125,585 - GFF1487 0.17 -0.5
125,585 - GFF1487 0.17 -0.5
125,587 + GFF1487 0.17 -0.7
125,588 - GFF1487 0.17 -1.5
125,635 + GFF1487 0.21 -0.2
125,635 + GFF1487 0.21 -1.1
125,636 - GFF1487 0.21 +0.3
125,710 + GFF1487 0.26 -0.1
125,711 - GFF1487 0.26 +0.3
125,711 - GFF1487 0.26 -0.1
125,803 + GFF1487 0.33 -0.6
125,803 + GFF1487 0.33 +0.1
125,935 + GFF1487 0.43 +0.2
125,935 + GFF1487 0.43 -0.0
125,935 + GFF1487 0.43 +0.8
125,936 - GFF1487 0.43 -0.1
126,090 + GFF1487 0.54 -0.1
126,295 + GFF1487 0.69 -0.8
126,298 + GFF1487 0.70 -0.1
126,298 + GFF1487 0.70 -1.0
126,299 - GFF1487 0.70 +0.2
126,299 - GFF1487 0.70 +0.6
126,319 + GFF1487 0.71 +0.9
126,319 + GFF1487 0.71 -1.5
126,319 + GFF1487 0.71 -0.3
126,319 + GFF1487 0.71 -0.2
126,320 - GFF1487 0.71 -1.1
126,320 - GFF1487 0.71 +0.9
126,320 - GFF1487 0.71 +0.2
126,418 + GFF1487 0.79 +0.5
126,418 + GFF1487 0.79 +0.1
126,418 + GFF1487 0.79 +0.6
126,418 + GFF1487 0.79 +1.0
126,419 - GFF1487 0.79 +0.2
126,419 - GFF1487 0.79 -0.1
126,419 - GFF1487 0.79 -0.5
126,419 - GFF1487 0.79 -0.6
126,419 - GFF1487 0.79 -0.2
126,419 - GFF1487 0.79 -0.6
126,487 + GFF1487 0.84 -0.1
126,877 + +0.5
126,877 + -0.1
126,878 - +0.1
126,878 - -0.3
126,878 - -0.7
127,212 + GFF1488 0.23 +0.4
127,215 - GFF1488 0.23 -1.4

Or see this region's nucleotide sequence