Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1445 and GFF1446 overlap by 1 nucleotides GFF1446 and GFF1447 are separated by 42 nucleotides GFF1447 and GFF1448 are separated by 106 nucleotides
GFF1445 - Melamine deaminase, at 68,574 to 69,938
GFF1445
GFF1446 - Maleylacetate reductase, at 69,938 to 71,026
GFF1446
GFF1447 - hypothetical protein, at 71,069 to 71,464
GFF1447
GFF1448 - HTH-type transcriptional regulator DmlR, at 71,571 to 72,485
GFF1448
Position (kb) 69
70
71
72 Strain fitness (log2 ratio) -2
-1
0
1 at 68.951 kb on + strand, within GFF1445 at 68.951 kb on + strand, within GFF1445 at 69.103 kb on + strand, within GFF1445 at 69.364 kb on - strand, within GFF1445 at 69.542 kb on + strand, within GFF1445 at 69.542 kb on + strand, within GFF1445 at 69.542 kb on + strand, within GFF1445 at 69.542 kb on + strand, within GFF1445 at 69.561 kb on - strand, within GFF1445 at 69.688 kb on + strand, within GFF1445 at 69.688 kb on + strand, within GFF1445 at 69.688 kb on + strand, within GFF1445 at 69.822 kb on + strand at 69.822 kb on + strand at 69.823 kb on - strand at 69.823 kb on - strand at 69.859 kb on - strand at 69.987 kb on + strand at 69.988 kb on - strand at 70.224 kb on + strand, within GFF1446 at 70.225 kb on - strand, within GFF1446 at 70.225 kb on - strand, within GFF1446 at 70.572 kb on + strand, within GFF1446 at 70.572 kb on + strand, within GFF1446 at 70.572 kb on + strand, within GFF1446 at 70.572 kb on + strand, within GFF1446 at 70.573 kb on - strand, within GFF1446 at 70.668 kb on + strand, within GFF1446 at 70.668 kb on + strand, within GFF1446 at 70.669 kb on - strand, within GFF1446 at 70.669 kb on - strand, within GFF1446 at 70.669 kb on - strand, within GFF1446 at 70.669 kb on - strand, within GFF1446 at 70.819 kb on + strand, within GFF1446 at 70.820 kb on - strand, within GFF1446 at 70.820 kb on - strand, within GFF1446 at 70.820 kb on - strand, within GFF1446 at 71.007 kb on + strand at 71.007 kb on + strand at 71.008 kb on - strand at 71.008 kb on - strand at 71.166 kb on + strand, within GFF1447 at 71.166 kb on + strand, within GFF1447 at 71.166 kb on + strand, within GFF1447 at 71.166 kb on + strand, within GFF1447 at 71.166 kb on + strand, within GFF1447 at 71.166 kb on + strand, within GFF1447 at 71.166 kb on + strand, within GFF1447 at 71.166 kb on + strand, within GFF1447 at 71.166 kb on + strand, within GFF1447 at 71.166 kb on + strand, within GFF1447 at 71.167 kb on - strand, within GFF1447 at 71.167 kb on - strand, within GFF1447 at 71.167 kb on - strand, within GFF1447 at 71.167 kb on - strand, within GFF1447 at 71.167 kb on - strand, within GFF1447 at 71.241 kb on + strand, within GFF1447 at 71.298 kb on + strand, within GFF1447 at 71.299 kb on - strand, within GFF1447 at 71.481 kb on + strand at 71.481 kb on + strand at 71.482 kb on - strand at 71.482 kb on - strand at 71.570 kb on + strand at 71.766 kb on + strand, within GFF1448 at 71.886 kb on + strand, within GFF1448 at 71.886 kb on + strand, within GFF1448 at 71.886 kb on + strand, within GFF1448 at 71.886 kb on + strand, within GFF1448 at 71.887 kb on - strand, within GFF1448 at 71.887 kb on - strand, within GFF1448 at 71.922 kb on + strand, within GFF1448 at 71.922 kb on + strand, within GFF1448 at 71.961 kb on + strand, within GFF1448
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 68,951 + GFF1445 0.28 -0.1 68,951 + GFF1445 0.28 +0.3 69,103 + GFF1445 0.39 -0.4 69,364 - GFF1445 0.58 +0.3 69,542 + GFF1445 0.71 +0.7 69,542 + GFF1445 0.71 +0.1 69,542 + GFF1445 0.71 -0.3 69,542 + GFF1445 0.71 -0.6 69,561 - GFF1445 0.72 -1.9 69,688 + GFF1445 0.82 +0.9 69,688 + GFF1445 0.82 +0.5 69,688 + GFF1445 0.82 -1.1 69,822 + +0.1 69,822 + -0.3 69,823 - +0.7 69,823 - +0.4 69,859 - +0.4 69,987 + -0.2 69,988 - -0.5 70,224 + GFF1446 0.26 -0.8 70,225 - GFF1446 0.26 -0.2 70,225 - GFF1446 0.26 -0.4 70,572 + GFF1446 0.58 -0.1 70,572 + GFF1446 0.58 +0.1 70,572 + GFF1446 0.58 +1.1 70,572 + GFF1446 0.58 -0.1 70,573 - GFF1446 0.58 +0.2 70,668 + GFF1446 0.67 +0.5 70,668 + GFF1446 0.67 +0.9 70,669 - GFF1446 0.67 +0.5 70,669 - GFF1446 0.67 +0.7 70,669 - GFF1446 0.67 -0.8 70,669 - GFF1446 0.67 -0.7 70,819 + GFF1446 0.81 +1.2 70,820 - GFF1446 0.81 +0.5 70,820 - GFF1446 0.81 -0.6 70,820 - GFF1446 0.81 -0.5 71,007 + -0.2 71,007 + -0.1 71,008 - +0.1 71,008 - +0.7 71,166 + GFF1447 0.24 -0.9 71,166 + GFF1447 0.24 -0.6 71,166 + GFF1447 0.24 +1.1 71,166 + GFF1447 0.24 +0.6 71,166 + GFF1447 0.24 +0.4 71,166 + GFF1447 0.24 -0.3 71,166 + GFF1447 0.24 +0.0 71,166 + GFF1447 0.24 -0.0 71,166 + GFF1447 0.24 +1.0 71,166 + GFF1447 0.24 -0.7 71,167 - GFF1447 0.25 +1.1 71,167 - GFF1447 0.25 -0.3 71,167 - GFF1447 0.25 +0.0 71,167 - GFF1447 0.25 -0.6 71,167 - GFF1447 0.25 +1.5 71,241 + GFF1447 0.43 +0.9 71,298 + GFF1447 0.58 +0.1 71,299 - GFF1447 0.58 -0.2 71,481 + +1.0 71,481 + -0.5 71,482 - -1.0 71,482 - -0.1 71,570 + -0.9 71,766 + GFF1448 0.21 +0.5 71,886 + GFF1448 0.34 +0.3 71,886 + GFF1448 0.34 +0.4 71,886 + GFF1448 0.34 +0.1 71,886 + GFF1448 0.34 +0.5 71,887 - GFF1448 0.35 +1.0 71,887 - GFF1448 0.35 -0.1 71,922 + GFF1448 0.38 -0.5 71,922 + GFF1448 0.38 +0.6 71,961 + GFF1448 0.43 -0.3
Or see this region's nucleotide sequence