Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1408 and GFF1409 are separated by 39 nucleotides GFF1409 and GFF1410 are separated by 45 nucleotides GFF1410 and GFF1411 are separated by 130 nucleotides
GFF1408 - Multidrug resistance protein MdtB, at 26,770 to 29,907
GFF1408
GFF1409 - Putative monooxygenase, at 29,947 to 30,279
GFF1409
GFF1410 - hypothetical protein, at 30,325 to 31,344
GFF1410
GFF1411 - hypothetical protein, at 31,475 to 34,111
GFF1411
Position (kb) 30
31
32 Strain fitness (log2 ratio) -2
-1
0
1 at 29.350 kb on + strand, within GFF1408 at 29.380 kb on + strand, within GFF1408 at 29.381 kb on - strand, within GFF1408 at 29.381 kb on - strand, within GFF1408 at 29.401 kb on + strand, within GFF1408 at 29.401 kb on + strand, within GFF1408 at 29.402 kb on - strand, within GFF1408 at 29.402 kb on - strand, within GFF1408 at 29.404 kb on - strand, within GFF1408 at 29.428 kb on + strand, within GFF1408 at 29.476 kb on + strand, within GFF1408 at 29.476 kb on + strand, within GFF1408 at 29.477 kb on - strand, within GFF1408 at 29.617 kb on + strand at 29.617 kb on + strand at 29.618 kb on - strand at 29.782 kb on + strand at 29.782 kb on + strand at 29.782 kb on + strand at 29.783 kb on - strand at 29.800 kb on + strand at 29.800 kb on + strand at 29.801 kb on - strand at 29.801 kb on - strand at 29.801 kb on - strand at 29.801 kb on - strand at 29.807 kb on - strand at 29.807 kb on - strand at 29.807 kb on - strand at 29.807 kb on - strand at 29.807 kb on - strand at 29.807 kb on - strand at 30.154 kb on + strand, within GFF1409 at 30.154 kb on + strand, within GFF1409 at 30.154 kb on + strand, within GFF1409 at 30.154 kb on + strand, within GFF1409 at 30.154 kb on + strand, within GFF1409 at 30.154 kb on + strand, within GFF1409 at 30.155 kb on - strand, within GFF1409 at 30.155 kb on - strand, within GFF1409 at 30.155 kb on - strand, within GFF1409 at 30.155 kb on - strand, within GFF1409 at 30.208 kb on + strand, within GFF1409 at 30.208 kb on + strand, within GFF1409 at 30.208 kb on + strand, within GFF1409 at 30.208 kb on + strand, within GFF1409 at 30.209 kb on - strand, within GFF1409 at 30.209 kb on - strand, within GFF1409 at 30.251 kb on + strand at 30.285 kb on + strand at 30.285 kb on + strand at 30.286 kb on - strand at 30.310 kb on - strand at 30.310 kb on - strand at 30.570 kb on - strand, within GFF1410 at 30.971 kb on + strand, within GFF1410 at 31.133 kb on + strand, within GFF1410 at 31.133 kb on + strand, within GFF1410 at 31.134 kb on - strand, within GFF1410 at 31.241 kb on + strand, within GFF1410 at 31.447 kb on + strand at 31.447 kb on + strand at 31.447 kb on + strand at 31.447 kb on + strand at 31.447 kb on + strand at 31.448 kb on - strand at 31.448 kb on - strand at 31.489 kb on + strand at 31.489 kb on + strand at 31.824 kb on + strand, within GFF1411 at 31.824 kb on + strand, within GFF1411 at 31.825 kb on - strand, within GFF1411 at 31.858 kb on - strand, within GFF1411
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 29,350 + GFF1408 0.82 +0.3 29,380 + GFF1408 0.83 -0.5 29,381 - GFF1408 0.83 -0.0 29,381 - GFF1408 0.83 +0.1 29,401 + GFF1408 0.84 -0.6 29,401 + GFF1408 0.84 -0.3 29,402 - GFF1408 0.84 -1.7 29,402 - GFF1408 0.84 -0.7 29,404 - GFF1408 0.84 +0.2 29,428 + GFF1408 0.85 +0.5 29,476 + GFF1408 0.86 +0.0 29,476 + GFF1408 0.86 +0.7 29,477 - GFF1408 0.86 +0.4 29,617 + +0.4 29,617 + +0.1 29,618 - +0.6 29,782 + -0.1 29,782 + +0.1 29,782 + +0.6 29,783 - +0.2 29,800 + +0.3 29,800 + -1.1 29,801 - -0.5 29,801 - +0.1 29,801 - -0.2 29,801 - -0.6 29,807 - +0.2 29,807 - +0.8 29,807 - -0.5 29,807 - +0.0 29,807 - -0.7 29,807 - -0.1 30,154 + GFF1409 0.62 +0.8 30,154 + GFF1409 0.62 +0.4 30,154 + GFF1409 0.62 +1.2 30,154 + GFF1409 0.62 -0.8 30,154 + GFF1409 0.62 +0.3 30,154 + GFF1409 0.62 -0.5 30,155 - GFF1409 0.62 +0.1 30,155 - GFF1409 0.62 -0.1 30,155 - GFF1409 0.62 +0.7 30,155 - GFF1409 0.62 -0.6 30,208 + GFF1409 0.78 -0.1 30,208 + GFF1409 0.78 -0.1 30,208 + GFF1409 0.78 -0.9 30,208 + GFF1409 0.78 +0.0 30,209 - GFF1409 0.79 -0.3 30,209 - GFF1409 0.79 +0.9 30,251 + -2.1 30,285 + -0.1 30,285 + +0.2 30,286 - +0.5 30,310 - +0.4 30,310 - +0.3 30,570 - GFF1410 0.24 +0.5 30,971 + GFF1410 0.63 -0.9 31,133 + GFF1410 0.79 +0.3 31,133 + GFF1410 0.79 +0.5 31,134 - GFF1410 0.79 -0.7 31,241 + GFF1410 0.90 -0.9 31,447 + +0.8 31,447 + -1.4 31,447 + -0.1 31,447 + +0.1 31,447 + +0.7 31,448 - +0.2 31,448 - +0.8 31,489 + +0.1 31,489 + +1.0 31,824 + GFF1411 0.13 -0.8 31,824 + GFF1411 0.13 +0.2 31,825 - GFF1411 0.13 +0.3 31,858 - GFF1411 0.15 +0.8
Or see this region's nucleotide sequence