Strain Fitness in Xanthobacter sp. DMC5 around GFF1388

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1387 and GFF1388 are separated by 27 nucleotidesGFF1388 and GFF1389 are separated by 9 nucleotidesGFF1389 and GFF1390 overlap by 1 nucleotides GFF1387 - 1,2-phenylacetyl-CoA epoxidase, subunit E, at 7,224 to 8,300 GFF1387 GFF1388 - Putative 1,2-phenylacetyl-CoA epoxidase, subunit D, at 8,328 to 8,852 GFF1388 GFF1389 - 1,2-phenylacetyl-CoA epoxidase, subunit C, at 8,862 to 9,638 GFF1389 GFF1390 - 1,2-phenylacetyl-CoA epoxidase, subunit B, at 9,638 to 9,922 GFF1390 Position (kb) 8 9Strain fitness (log2 ratio) -1 0 1at 7.393 kb on + strand, within GFF1387at 7.394 kb on - strand, within GFF1387at 7.668 kb on - strand, within GFF1387at 7.798 kb on + strand, within GFF1387at 7.798 kb on + strand, within GFF1387at 7.799 kb on - strand, within GFF1387at 7.861 kb on + strand, within GFF1387at 7.861 kb on + strand, within GFF1387at 7.862 kb on - strand, within GFF1387at 7.957 kb on + strand, within GFF1387at 7.957 kb on + strand, within GFF1387at 7.957 kb on + strand, within GFF1387at 7.958 kb on - strand, within GFF1387at 8.132 kb on - strand, within GFF1387at 8.179 kb on + strand, within GFF1387at 8.179 kb on + strand, within GFF1387at 8.179 kb on + strand, within GFF1387at 8.179 kb on + strand, within GFF1387at 8.179 kb on + strand, within GFF1387at 8.180 kb on - strand, within GFF1387at 8.326 kb on - strandat 8.326 kb on - strandat 8.377 kb on + strandat 8.378 kb on - strandat 8.378 kb on - strandat 8.378 kb on - strandat 8.542 kb on + strand, within GFF1388at 8.695 kb on + strand, within GFF1388at 8.696 kb on - strand, within GFF1388at 8.696 kb on - strand, within GFF1388at 8.917 kb on + strandat 8.918 kb on - strandat 8.965 kb on + strand, within GFF1389at 8.965 kb on + strand, within GFF1389at 8.966 kb on - strand, within GFF1389at 8.966 kb on - strand, within GFF1389at 8.966 kb on - strand, within GFF1389at 8.966 kb on - strand, within GFF1389at 8.966 kb on - strand, within GFF1389at 9.115 kb on + strand, within GFF1389at 9.115 kb on + strand, within GFF1389at 9.115 kb on + strand, within GFF1389at 9.115 kb on + strand, within GFF1389at 9.115 kb on + strand, within GFF1389at 9.116 kb on - strand, within GFF1389at 9.116 kb on - strand, within GFF1389at 9.116 kb on - strand, within GFF1389at 9.116 kb on - strand, within GFF1389at 9.116 kb on - strand, within GFF1389at 9.116 kb on - strand, within GFF1389at 9.116 kb on - strand, within GFF1389at 9.116 kb on - strand, within GFF1389at 9.214 kb on + strand, within GFF1389at 9.215 kb on - strand, within GFF1389at 9.509 kb on - strand, within GFF1389at 9.687 kb on + strand, within GFF1390at 9.688 kb on - strand, within GFF1390at 9.797 kb on - strand, within GFF1390at 9.797 kb on - strand, within GFF1390at 9.798 kb on + strand, within GFF1390at 9.799 kb on - strand, within GFF1390at 9.799 kb on - strand, within GFF1390at 9.799 kb on - strand, within GFF1390

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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7,393 + GFF1387 0.16 -1.0
7,394 - GFF1387 0.16 -0.7
7,668 - GFF1387 0.41 -0.5
7,798 + GFF1387 0.53 +0.6
7,798 + GFF1387 0.53 -1.3
7,799 - GFF1387 0.53 +0.1
7,861 + GFF1387 0.59 -0.2
7,861 + GFF1387 0.59 -0.6
7,862 - GFF1387 0.59 +0.1
7,957 + GFF1387 0.68 +0.5
7,957 + GFF1387 0.68 +0.8
7,957 + GFF1387 0.68 +0.9
7,958 - GFF1387 0.68 -0.0
8,132 - GFF1387 0.84 -0.1
8,179 + GFF1387 0.89 -0.7
8,179 + GFF1387 0.89 -1.0
8,179 + GFF1387 0.89 -0.1
8,179 + GFF1387 0.89 -0.6
8,179 + GFF1387 0.89 -0.6
8,180 - GFF1387 0.89 +0.2
8,326 - -0.3
8,326 - -0.8
8,377 + -0.4
8,378 - -0.1
8,378 - +0.5
8,378 - +0.1
8,542 + GFF1388 0.41 -0.9
8,695 + GFF1388 0.70 +0.9
8,696 - GFF1388 0.70 -0.5
8,696 - GFF1388 0.70 +0.1
8,917 + +0.9
8,918 - -0.7
8,965 + GFF1389 0.13 -1.2
8,965 + GFF1389 0.13 -1.2
8,966 - GFF1389 0.13 -0.2
8,966 - GFF1389 0.13 -0.3
8,966 - GFF1389 0.13 +0.6
8,966 - GFF1389 0.13 +0.1
8,966 - GFF1389 0.13 +0.4
9,115 + GFF1389 0.33 +0.7
9,115 + GFF1389 0.33 +0.2
9,115 + GFF1389 0.33 -0.1
9,115 + GFF1389 0.33 +0.2
9,115 + GFF1389 0.33 +0.8
9,116 - GFF1389 0.33 +1.4
9,116 - GFF1389 0.33 -0.6
9,116 - GFF1389 0.33 -0.6
9,116 - GFF1389 0.33 +0.9
9,116 - GFF1389 0.33 +0.3
9,116 - GFF1389 0.33 +0.1
9,116 - GFF1389 0.33 -0.2
9,116 - GFF1389 0.33 +1.5
9,214 + GFF1389 0.45 +1.0
9,215 - GFF1389 0.45 -0.0
9,509 - GFF1389 0.83 -0.8
9,687 + GFF1390 0.17 +0.5
9,688 - GFF1390 0.18 +0.0
9,797 - GFF1390 0.56 +0.4
9,797 - GFF1390 0.56 +0.1
9,798 + GFF1390 0.56 +0.7
9,799 - GFF1390 0.56 +1.0
9,799 - GFF1390 0.56 -1.5
9,799 - GFF1390 0.56 +0.2

Or see this region's nucleotide sequence