Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1385 and GFF1386 are separated by 81 nucleotides GFF1386 and GFF1387 are separated by 10 nucleotides
GFF1385 - Phenylacetate-coenzyme A ligase, at 5,045 to 6,376
GFF1385
GFF1386 - hypothetical protein, at 6,458 to 7,213
GFF1386
GFF1387 - 1,2-phenylacetyl-CoA epoxidase, subunit E, at 7,224 to 8,300
GFF1387
Position (kb) 6
7
8 Strain fitness (log2 ratio) -1
0
1 at 5.477 kb on + strand, within GFF1385 at 5.477 kb on + strand, within GFF1385 at 5.478 kb on - strand, within GFF1385 at 5.483 kb on + strand, within GFF1385 at 5.483 kb on + strand, within GFF1385 at 5.483 kb on + strand, within GFF1385 at 5.484 kb on - strand, within GFF1385 at 5.516 kb on + strand, within GFF1385 at 5.630 kb on + strand, within GFF1385 at 5.631 kb on - strand, within GFF1385 at 5.631 kb on - strand, within GFF1385 at 5.631 kb on - strand, within GFF1385 at 5.780 kb on + strand, within GFF1385 at 5.780 kb on + strand, within GFF1385 at 5.780 kb on + strand, within GFF1385 at 5.781 kb on - strand, within GFF1385 at 5.781 kb on - strand, within GFF1385 at 5.781 kb on - strand, within GFF1385 at 6.215 kb on + strand, within GFF1385 at 6.215 kb on + strand, within GFF1385 at 6.215 kb on + strand, within GFF1385 at 6.215 kb on + strand, within GFF1385 at 6.216 kb on - strand, within GFF1385 at 6.216 kb on - strand, within GFF1385 at 6.216 kb on - strand, within GFF1385 at 6.385 kb on + strand at 6.386 kb on - strand at 6.386 kb on - strand at 6.565 kb on - strand, within GFF1386 at 6.565 kb on - strand, within GFF1386 at 6.747 kb on + strand, within GFF1386 at 6.747 kb on + strand, within GFF1386 at 6.747 kb on + strand, within GFF1386 at 6.747 kb on + strand, within GFF1386 at 6.747 kb on + strand, within GFF1386 at 6.748 kb on - strand, within GFF1386 at 6.748 kb on - strand, within GFF1386 at 7.185 kb on + strand at 7.186 kb on - strand at 7.186 kb on - strand at 7.186 kb on - strand at 7.234 kb on + strand at 7.234 kb on + strand at 7.235 kb on - strand at 7.285 kb on + strand at 7.285 kb on + strand at 7.286 kb on - strand at 7.286 kb on - strand at 7.304 kb on - strand at 7.393 kb on + strand, within GFF1387 at 7.394 kb on - strand, within GFF1387 at 7.668 kb on - strand, within GFF1387 at 7.798 kb on + strand, within GFF1387 at 7.798 kb on + strand, within GFF1387 at 7.799 kb on - strand, within GFF1387 at 7.861 kb on + strand, within GFF1387 at 7.861 kb on + strand, within GFF1387 at 7.862 kb on - strand, within GFF1387 at 7.957 kb on + strand, within GFF1387 at 7.957 kb on + strand, within GFF1387 at 7.957 kb on + strand, within GFF1387 at 7.958 kb on - strand, within GFF1387 at 8.132 kb on - strand, within GFF1387 at 8.179 kb on + strand, within GFF1387 at 8.179 kb on + strand, within GFF1387 at 8.179 kb on + strand, within GFF1387 at 8.179 kb on + strand, within GFF1387 at 8.179 kb on + strand, within GFF1387 at 8.180 kb on - strand, within GFF1387
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 5,477 + GFF1385 0.32 -1.6 5,477 + GFF1385 0.32 -0.2 5,478 - GFF1385 0.33 -0.5 5,483 + GFF1385 0.33 -1.1 5,483 + GFF1385 0.33 +0.2 5,483 + GFF1385 0.33 -0.1 5,484 - GFF1385 0.33 -0.1 5,516 + GFF1385 0.35 -0.4 5,630 + GFF1385 0.44 +0.5 5,631 - GFF1385 0.44 -0.5 5,631 - GFF1385 0.44 +0.0 5,631 - GFF1385 0.44 +1.6 5,780 + GFF1385 0.55 -0.6 5,780 + GFF1385 0.55 -1.6 5,780 + GFF1385 0.55 +1.1 5,781 - GFF1385 0.55 -0.2 5,781 - GFF1385 0.55 +0.2 5,781 - GFF1385 0.55 -0.5 6,215 + GFF1385 0.88 -0.9 6,215 + GFF1385 0.88 -0.2 6,215 + GFF1385 0.88 -0.5 6,215 + GFF1385 0.88 -0.5 6,216 - GFF1385 0.88 -0.5 6,216 - GFF1385 0.88 +0.6 6,216 - GFF1385 0.88 +0.5 6,385 + -0.2 6,386 - -0.4 6,386 - -0.3 6,565 - GFF1386 0.14 -0.9 6,565 - GFF1386 0.14 -1.5 6,747 + GFF1386 0.38 -0.9 6,747 + GFF1386 0.38 +1.3 6,747 + GFF1386 0.38 -0.6 6,747 + GFF1386 0.38 -0.6 6,747 + GFF1386 0.38 +0.0 6,748 - GFF1386 0.38 +1.4 6,748 - GFF1386 0.38 -0.1 7,185 + -0.6 7,186 - -0.1 7,186 - -0.3 7,186 - -0.3 7,234 + +0.1 7,234 + +1.5 7,235 - -0.1 7,285 + -0.2 7,285 + +1.4 7,286 - -0.2 7,286 - -0.2 7,304 - +1.1 7,393 + GFF1387 0.16 -1.0 7,394 - GFF1387 0.16 -0.7 7,668 - GFF1387 0.41 -0.5 7,798 + GFF1387 0.53 +0.6 7,798 + GFF1387 0.53 -1.3 7,799 - GFF1387 0.53 +0.1 7,861 + GFF1387 0.59 -0.2 7,861 + GFF1387 0.59 -0.6 7,862 - GFF1387 0.59 +0.1 7,957 + GFF1387 0.68 +0.5 7,957 + GFF1387 0.68 +0.8 7,957 + GFF1387 0.68 +0.9 7,958 - GFF1387 0.68 -0.0 8,132 - GFF1387 0.84 -0.1 8,179 + GFF1387 0.89 -0.7 8,179 + GFF1387 0.89 -1.0 8,179 + GFF1387 0.89 -0.1 8,179 + GFF1387 0.89 -0.6 8,179 + GFF1387 0.89 -0.6 8,180 - GFF1387 0.89 +0.2
Or see this region's nucleotide sequence