Strain Fitness in Xanthobacter sp. DMC5 around GFF1305

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1304 and GFF1305 are separated by 30 nucleotidesGFF1305 and GFF1306 are separated by 81 nucleotides GFF1304 - hypothetical protein, at 1,408,706 to 1,409,713 GFF1304 GFF1305 - High-affinity branched-chain amino acid transport system permease protein LivH, at 1,409,744 to 1,410,616 GFF1305 GFF1306 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 1,410,698 to 1,411,945 GFF1306 Position (kb) 1409 1410 1411Strain fitness (log2 ratio) -2 -1 0 1at 1409.169 kb on + strand, within GFF1304at 1409.169 kb on + strand, within GFF1304at 1409.170 kb on - strand, within GFF1304at 1409.170 kb on - strand, within GFF1304at 1409.172 kb on + strand, within GFF1304at 1409.172 kb on + strand, within GFF1304at 1409.292 kb on + strand, within GFF1304at 1409.293 kb on - strand, within GFF1304at 1409.293 kb on - strand, within GFF1304at 1409.295 kb on + strand, within GFF1304at 1409.296 kb on - strand, within GFF1304at 1409.296 kb on - strand, within GFF1304at 1409.335 kb on - strand, within GFF1304at 1409.335 kb on - strand, within GFF1304at 1409.461 kb on - strand, within GFF1304at 1409.461 kb on - strand, within GFF1304at 1409.509 kb on + strand, within GFF1304at 1409.510 kb on - strand, within GFF1304at 1409.510 kb on - strand, within GFF1304at 1409.511 kb on + strand, within GFF1304at 1409.551 kb on - strand, within GFF1304at 1409.740 kb on - strandat 1409.957 kb on - strand, within GFF1305at 1410.192 kb on + strand, within GFF1305at 1410.193 kb on - strand, within GFF1305at 1410.193 kb on - strand, within GFF1305at 1410.193 kb on - strand, within GFF1305at 1410.193 kb on - strand, within GFF1305at 1410.204 kb on + strand, within GFF1305at 1410.205 kb on - strand, within GFF1305at 1410.205 kb on - strand, within GFF1305at 1410.205 kb on - strand, within GFF1305at 1410.209 kb on + strand, within GFF1305at 1410.209 kb on + strand, within GFF1305at 1410.209 kb on + strand, within GFF1305at 1410.210 kb on - strand, within GFF1305at 1410.210 kb on - strand, within GFF1305at 1410.303 kb on + strand, within GFF1305at 1410.303 kb on + strand, within GFF1305at 1410.303 kb on + strand, within GFF1305at 1410.304 kb on - strand, within GFF1305at 1410.304 kb on - strand, within GFF1305at 1410.319 kb on + strand, within GFF1305at 1410.320 kb on - strand, within GFF1305at 1410.352 kb on - strand, within GFF1305at 1410.434 kb on - strand, within GFF1305at 1410.468 kb on + strand, within GFF1305at 1410.606 kb on + strandat 1410.861 kb on + strand, within GFF1306at 1410.861 kb on + strand, within GFF1306at 1410.861 kb on + strand, within GFF1306at 1410.862 kb on - strand, within GFF1306at 1410.885 kb on + strand, within GFF1306at 1410.886 kb on - strand, within GFF1306at 1410.886 kb on - strand, within GFF1306at 1410.974 kb on - strand, within GFF1306at 1410.974 kb on - strand, within GFF1306at 1410.981 kb on + strand, within GFF1306at 1411.011 kb on + strand, within GFF1306at 1411.023 kb on + strand, within GFF1306at 1411.024 kb on - strand, within GFF1306at 1411.074 kb on + strand, within GFF1306at 1411.074 kb on + strand, within GFF1306at 1411.077 kb on + strand, within GFF1306at 1411.077 kb on + strand, within GFF1306at 1411.077 kb on + strand, within GFF1306at 1411.078 kb on - strand, within GFF1306at 1411.078 kb on - strand, within GFF1306at 1411.078 kb on - strand, within GFF1306at 1411.186 kb on - strand, within GFF1306at 1411.285 kb on - strand, within GFF1306at 1411.381 kb on - strand, within GFF1306at 1411.381 kb on - strand, within GFF1306at 1411.386 kb on + strand, within GFF1306at 1411.386 kb on + strand, within GFF1306at 1411.485 kb on + strand, within GFF1306at 1411.485 kb on + strand, within GFF1306at 1411.485 kb on + strand, within GFF1306at 1411.485 kb on + strand, within GFF1306at 1411.486 kb on - strand, within GFF1306at 1411.486 kb on - strand, within GFF1306at 1411.486 kb on - strand, within GFF1306at 1411.486 kb on - strand, within GFF1306at 1411.486 kb on - strand, within GFF1306at 1411.489 kb on + strand, within GFF1306at 1411.539 kb on + strand, within GFF1306at 1411.539 kb on + strand, within GFF1306at 1411.539 kb on + strand, within GFF1306at 1411.539 kb on + strand, within GFF1306at 1411.539 kb on + strand, within GFF1306at 1411.540 kb on - strand, within GFF1306at 1411.540 kb on - strand, within GFF1306at 1411.540 kb on - strand, within GFF1306at 1411.540 kb on - strand, within GFF1306

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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1,409,169 + GFF1304 0.46 +1.0
1,409,169 + GFF1304 0.46 +1.0
1,409,170 - GFF1304 0.46 -0.2
1,409,170 - GFF1304 0.46 +0.0
1,409,172 + GFF1304 0.46 +0.2
1,409,172 + GFF1304 0.46 -0.8
1,409,292 + GFF1304 0.58 -0.8
1,409,293 - GFF1304 0.58 +0.2
1,409,293 - GFF1304 0.58 -0.4
1,409,295 + GFF1304 0.58 -0.2
1,409,296 - GFF1304 0.59 +0.0
1,409,296 - GFF1304 0.59 +0.0
1,409,335 - GFF1304 0.62 -1.5
1,409,335 - GFF1304 0.62 -0.4
1,409,461 - GFF1304 0.75 +0.9
1,409,461 - GFF1304 0.75 +1.0
1,409,509 + GFF1304 0.80 -0.4
1,409,510 - GFF1304 0.80 -1.0
1,409,510 - GFF1304 0.80 +0.2
1,409,511 + GFF1304 0.80 +0.5
1,409,551 - GFF1304 0.84 -0.0
1,409,740 - +0.2
1,409,957 - GFF1305 0.24 -0.1
1,410,192 + GFF1305 0.51 -0.2
1,410,193 - GFF1305 0.51 -0.4
1,410,193 - GFF1305 0.51 -0.5
1,410,193 - GFF1305 0.51 -0.2
1,410,193 - GFF1305 0.51 +0.6
1,410,204 + GFF1305 0.53 +0.4
1,410,205 - GFF1305 0.53 -0.0
1,410,205 - GFF1305 0.53 -0.3
1,410,205 - GFF1305 0.53 -0.8
1,410,209 + GFF1305 0.53 -0.6
1,410,209 + GFF1305 0.53 -0.4
1,410,209 + GFF1305 0.53 +1.6
1,410,210 - GFF1305 0.53 -0.9
1,410,210 - GFF1305 0.53 -0.5
1,410,303 + GFF1305 0.64 -1.8
1,410,303 + GFF1305 0.64 -0.2
1,410,303 + GFF1305 0.64 -0.0
1,410,304 - GFF1305 0.64 -0.6
1,410,304 - GFF1305 0.64 +0.3
1,410,319 + GFF1305 0.66 +0.6
1,410,320 - GFF1305 0.66 -1.2
1,410,352 - GFF1305 0.70 -1.2
1,410,434 - GFF1305 0.79 +0.2
1,410,468 + GFF1305 0.83 -0.4
1,410,606 + +0.3
1,410,861 + GFF1306 0.13 -0.1
1,410,861 + GFF1306 0.13 +0.4
1,410,861 + GFF1306 0.13 +0.7
1,410,862 - GFF1306 0.13 +0.3
1,410,885 + GFF1306 0.15 +0.5
1,410,886 - GFF1306 0.15 +0.4
1,410,886 - GFF1306 0.15 -0.9
1,410,974 - GFF1306 0.22 -0.9
1,410,974 - GFF1306 0.22 -2.2
1,410,981 + GFF1306 0.23 +0.4
1,411,011 + GFF1306 0.25 +0.2
1,411,023 + GFF1306 0.26 +0.8
1,411,024 - GFF1306 0.26 +0.6
1,411,074 + GFF1306 0.30 -0.2
1,411,074 + GFF1306 0.30 -1.1
1,411,077 + GFF1306 0.30 +0.7
1,411,077 + GFF1306 0.30 -0.2
1,411,077 + GFF1306 0.30 +0.8
1,411,078 - GFF1306 0.30 -2.4
1,411,078 - GFF1306 0.30 -0.2
1,411,078 - GFF1306 0.30 +0.2
1,411,186 - GFF1306 0.39 -0.0
1,411,285 - GFF1306 0.47 +0.6
1,411,381 - GFF1306 0.55 +1.4
1,411,381 - GFF1306 0.55 +1.3
1,411,386 + GFF1306 0.55 +0.6
1,411,386 + GFF1306 0.55 +0.5
1,411,485 + GFF1306 0.63 -0.8
1,411,485 + GFF1306 0.63 -0.3
1,411,485 + GFF1306 0.63 +0.9
1,411,485 + GFF1306 0.63 -1.3
1,411,486 - GFF1306 0.63 -1.6
1,411,486 - GFF1306 0.63 +0.8
1,411,486 - GFF1306 0.63 -1.4
1,411,486 - GFF1306 0.63 -0.4
1,411,486 - GFF1306 0.63 +0.7
1,411,489 + GFF1306 0.63 +0.1
1,411,539 + GFF1306 0.67 +0.6
1,411,539 + GFF1306 0.67 -1.4
1,411,539 + GFF1306 0.67 -1.3
1,411,539 + GFF1306 0.67 +0.9
1,411,539 + GFF1306 0.67 +1.0
1,411,540 - GFF1306 0.67 -0.2
1,411,540 - GFF1306 0.67 +0.3
1,411,540 - GFF1306 0.67 -0.7
1,411,540 - GFF1306 0.67 +0.8

Or see this region's nucleotide sequence