Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF12 and GFF13 are separated by 7 nucleotides GFF13 and GFF14 are separated by 112 nucleotides
GFF12 - Ribosomal RNA small subunit methyltransferase B, at 15,991 to 17,355
GFF12
GFF13 - hypothetical protein, at 17,363 to 19,396
GFF13
GFF14 - hypothetical protein, at 19,509 to 20,594
GFF14
Position (kb) 17
18
19
20 Strain fitness (log2 ratio) -2
-1
0
1
2 at 16.659 kb on + strand, within GFF12 at 17.119 kb on + strand, within GFF12 at 17.120 kb on - strand, within GFF12 at 17.251 kb on + strand at 17.252 kb on - strand at 17.353 kb on + strand at 17.679 kb on + strand, within GFF13 at 17.679 kb on + strand, within GFF13 at 17.680 kb on - strand, within GFF13 at 17.680 kb on - strand, within GFF13 at 17.829 kb on + strand, within GFF13 at 17.830 kb on - strand, within GFF13 at 17.883 kb on + strand, within GFF13 at 17.883 kb on + strand, within GFF13 at 17.883 kb on + strand, within GFF13 at 17.883 kb on + strand, within GFF13 at 17.884 kb on - strand, within GFF13 at 17.884 kb on - strand, within GFF13 at 17.884 kb on - strand, within GFF13 at 17.992 kb on - strand, within GFF13 at 18.018 kb on + strand, within GFF13 at 18.079 kb on - strand, within GFF13 at 18.192 kb on + strand, within GFF13 at 18.192 kb on + strand, within GFF13 at 18.192 kb on + strand, within GFF13 at 18.193 kb on - strand, within GFF13 at 18.193 kb on - strand, within GFF13 at 18.193 kb on - strand, within GFF13 at 18.418 kb on - strand, within GFF13 at 18.418 kb on - strand, within GFF13 at 18.441 kb on + strand, within GFF13 at 18.442 kb on - strand, within GFF13 at 18.454 kb on - strand, within GFF13 at 18.454 kb on - strand, within GFF13 at 18.454 kb on - strand, within GFF13 at 18.719 kb on + strand, within GFF13 at 18.826 kb on - strand, within GFF13 at 18.892 kb on - strand, within GFF13 at 18.951 kb on + strand, within GFF13 at 18.951 kb on + strand, within GFF13 at 18.951 kb on + strand, within GFF13 at 18.952 kb on - strand, within GFF13 at 19.025 kb on - strand, within GFF13 at 19.025 kb on - strand, within GFF13 at 19.026 kb on + strand, within GFF13 at 19.026 kb on + strand, within GFF13 at 19.027 kb on - strand, within GFF13 at 19.027 kb on - strand, within GFF13 at 19.027 kb on - strand, within GFF13 at 19.027 kb on - strand, within GFF13 at 19.027 kb on - strand, within GFF13 at 19.027 kb on - strand, within GFF13 at 19.062 kb on + strand, within GFF13 at 19.242 kb on + strand at 19.242 kb on + strand at 19.243 kb on - strand at 19.243 kb on - strand at 19.407 kb on + strand at 19.533 kb on - strand at 19.533 kb on - strand at 19.707 kb on + strand, within GFF14 at 19.708 kb on - strand, within GFF14 at 19.768 kb on + strand, within GFF14 at 19.768 kb on + strand, within GFF14 at 19.769 kb on - strand, within GFF14 at 19.836 kb on + strand, within GFF14 at 19.836 kb on + strand, within GFF14 at 19.837 kb on - strand, within GFF14 at 19.837 kb on - strand, within GFF14 at 19.939 kb on - strand, within GFF14 at 20.229 kb on - strand, within GFF14
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 16,659 + GFF12 0.49 -1.5 17,119 + GFF12 0.83 +0.2 17,120 - GFF12 0.83 -0.2 17,251 + -0.3 17,252 - +0.1 17,353 + -1.0 17,679 + GFF13 0.16 +1.2 17,679 + GFF13 0.16 -1.1 17,680 - GFF13 0.16 -0.2 17,680 - GFF13 0.16 -0.2 17,829 + GFF13 0.23 -0.1 17,830 - GFF13 0.23 -0.2 17,883 + GFF13 0.26 -0.2 17,883 + GFF13 0.26 +1.1 17,883 + GFF13 0.26 +1.4 17,883 + GFF13 0.26 -0.0 17,884 - GFF13 0.26 -0.5 17,884 - GFF13 0.26 +0.1 17,884 - GFF13 0.26 +0.1 17,992 - GFF13 0.31 +0.5 18,018 + GFF13 0.32 +1.1 18,079 - GFF13 0.35 +0.6 18,192 + GFF13 0.41 -0.4 18,192 + GFF13 0.41 -0.8 18,192 + GFF13 0.41 -0.4 18,193 - GFF13 0.41 -0.9 18,193 - GFF13 0.41 +1.2 18,193 - GFF13 0.41 -0.2 18,418 - GFF13 0.52 -0.7 18,418 - GFF13 0.52 -2.0 18,441 + GFF13 0.53 -0.9 18,442 - GFF13 0.53 -0.6 18,454 - GFF13 0.54 -0.2 18,454 - GFF13 0.54 -0.7 18,454 - GFF13 0.54 -0.9 18,719 + GFF13 0.67 -1.1 18,826 - GFF13 0.72 +0.2 18,892 - GFF13 0.75 +0.1 18,951 + GFF13 0.78 -0.1 18,951 + GFF13 0.78 -0.4 18,951 + GFF13 0.78 -0.5 18,952 - GFF13 0.78 -0.3 19,025 - GFF13 0.82 +0.5 19,025 - GFF13 0.82 -0.5 19,026 + GFF13 0.82 +1.8 19,026 + GFF13 0.82 +0.6 19,027 - GFF13 0.82 +0.2 19,027 - GFF13 0.82 -0.1 19,027 - GFF13 0.82 +0.3 19,027 - GFF13 0.82 -0.4 19,027 - GFF13 0.82 -0.4 19,027 - GFF13 0.82 +0.5 19,062 + GFF13 0.84 +0.3 19,242 + -0.4 19,242 + +0.4 19,243 - -0.4 19,243 - -0.2 19,407 + -1.2 19,533 - +0.2 19,533 - +0.5 19,707 + GFF14 0.18 -1.6 19,708 - GFF14 0.18 -0.3 19,768 + GFF14 0.24 -0.3 19,768 + GFF14 0.24 -0.5 19,769 - GFF14 0.24 +0.8 19,836 + GFF14 0.30 -1.1 19,836 + GFF14 0.30 +0.9 19,837 - GFF14 0.30 +1.8 19,837 - GFF14 0.30 +0.1 19,939 - GFF14 0.40 -0.2 20,229 - GFF14 0.66 +1.2
Or see this region's nucleotide sequence