Strain Fitness in Xanthobacter sp. DMC5 around GFF1192

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1190 and GFF1191 are separated by 52 nucleotidesGFF1191 and GFF1192 are separated by 66 nucleotidesGFF1192 and GFF1193 are separated by 128 nucleotides GFF1190 - ECF RNA polymerase sigma factor SigR, at 1,290,716 to 1,291,459 GFF1190 GFF1191 - Plastocyanin, at 1,291,512 to 1,291,859 GFF1191 GFF1192 - 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, at 1,291,926 to 1,292,894 GFF1192 GFF1193 - HTH-type transcriptional regulator DmlR, at 1,293,023 to 1,293,970 GFF1193 Position (kb) 1291 1292 1293Strain fitness (log2 ratio) -1 0 1at 1291.143 kb on + strand, within GFF1190at 1291.155 kb on + strand, within GFF1190at 1291.156 kb on - strand, within GFF1190at 1291.171 kb on + strand, within GFF1190at 1291.171 kb on + strand, within GFF1190at 1291.216 kb on + strand, within GFF1190at 1291.217 kb on - strand, within GFF1190at 1291.218 kb on + strand, within GFF1190at 1291.218 kb on + strand, within GFF1190at 1291.566 kb on + strand, within GFF1191at 1291.576 kb on + strand, within GFF1191at 1291.577 kb on - strand, within GFF1191at 1291.653 kb on - strand, within GFF1191at 1291.673 kb on + strand, within GFF1191at 1291.674 kb on - strand, within GFF1191at 1292.105 kb on + strand, within GFF1192at 1292.105 kb on + strand, within GFF1192at 1292.106 kb on - strand, within GFF1192at 1292.106 kb on - strand, within GFF1192at 1292.106 kb on - strand, within GFF1192at 1292.136 kb on + strand, within GFF1192at 1292.152 kb on - strand, within GFF1192at 1292.179 kb on + strand, within GFF1192at 1292.180 kb on - strand, within GFF1192at 1292.228 kb on - strand, within GFF1192at 1292.398 kb on + strand, within GFF1192at 1292.398 kb on + strand, within GFF1192at 1292.398 kb on + strand, within GFF1192at 1292.398 kb on + strand, within GFF1192at 1292.399 kb on - strand, within GFF1192at 1292.399 kb on - strand, within GFF1192at 1292.446 kb on + strand, within GFF1192at 1292.447 kb on - strand, within GFF1192at 1292.447 kb on - strand, within GFF1192at 1292.679 kb on + strand, within GFF1192at 1292.679 kb on + strand, within GFF1192at 1292.679 kb on + strand, within GFF1192at 1292.680 kb on - strand, within GFF1192at 1292.837 kb on + strandat 1292.838 kb on - strandat 1292.838 kb on - strandat 1293.183 kb on + strand, within GFF1193at 1293.183 kb on + strand, within GFF1193at 1293.183 kb on + strand, within GFF1193at 1293.183 kb on + strand, within GFF1193at 1293.183 kb on + strand, within GFF1193at 1293.183 kb on + strand, within GFF1193at 1293.183 kb on + strand, within GFF1193at 1293.184 kb on - strand, within GFF1193at 1293.184 kb on - strand, within GFF1193at 1293.184 kb on - strand, within GFF1193at 1293.237 kb on + strand, within GFF1193at 1293.237 kb on + strand, within GFF1193at 1293.238 kb on - strand, within GFF1193at 1293.309 kb on + strand, within GFF1193at 1293.310 kb on - strand, within GFF1193at 1293.459 kb on + strand, within GFF1193at 1293.778 kb on - strand, within GFF1193

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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1,291,143 + GFF1190 0.57 +0.0
1,291,155 + GFF1190 0.59 -0.3
1,291,156 - GFF1190 0.59 -1.6
1,291,171 + GFF1190 0.61 -1.4
1,291,171 + GFF1190 0.61 +0.4
1,291,216 + GFF1190 0.67 -0.0
1,291,217 - GFF1190 0.67 +0.8
1,291,218 + GFF1190 0.67 +0.2
1,291,218 + GFF1190 0.67 -1.6
1,291,566 + GFF1191 0.16 -0.7
1,291,576 + GFF1191 0.18 +0.4
1,291,577 - GFF1191 0.19 -0.6
1,291,653 - GFF1191 0.41 -0.1
1,291,673 + GFF1191 0.46 -1.0
1,291,674 - GFF1191 0.47 -0.3
1,292,105 + GFF1192 0.18 -0.5
1,292,105 + GFF1192 0.18 +0.1
1,292,106 - GFF1192 0.19 -0.1
1,292,106 - GFF1192 0.19 -0.8
1,292,106 - GFF1192 0.19 -0.1
1,292,136 + GFF1192 0.22 -0.4
1,292,152 - GFF1192 0.23 +0.4
1,292,179 + GFF1192 0.26 +0.4
1,292,180 - GFF1192 0.26 +0.7
1,292,228 - GFF1192 0.31 -0.3
1,292,398 + GFF1192 0.49 +0.6
1,292,398 + GFF1192 0.49 -0.8
1,292,398 + GFF1192 0.49 -1.0
1,292,398 + GFF1192 0.49 -0.3
1,292,399 - GFF1192 0.49 +0.2
1,292,399 - GFF1192 0.49 -0.6
1,292,446 + GFF1192 0.54 -0.3
1,292,447 - GFF1192 0.54 -0.2
1,292,447 - GFF1192 0.54 +0.8
1,292,679 + GFF1192 0.78 -0.5
1,292,679 + GFF1192 0.78 +0.2
1,292,679 + GFF1192 0.78 -0.3
1,292,680 - GFF1192 0.78 -0.0
1,292,837 + -0.1
1,292,838 - -1.2
1,292,838 - +0.6
1,293,183 + GFF1193 0.17 -1.4
1,293,183 + GFF1193 0.17 -0.8
1,293,183 + GFF1193 0.17 +0.6
1,293,183 + GFF1193 0.17 +0.7
1,293,183 + GFF1193 0.17 -0.4
1,293,183 + GFF1193 0.17 -0.2
1,293,183 + GFF1193 0.17 -0.7
1,293,184 - GFF1193 0.17 +0.7
1,293,184 - GFF1193 0.17 -0.2
1,293,184 - GFF1193 0.17 +0.2
1,293,237 + GFF1193 0.23 +0.2
1,293,237 + GFF1193 0.23 +0.1
1,293,238 - GFF1193 0.23 -0.2
1,293,309 + GFF1193 0.30 -0.1
1,293,310 - GFF1193 0.30 -0.2
1,293,459 + GFF1193 0.46 +0.4
1,293,778 - GFF1193 0.80 -0.7

Or see this region's nucleotide sequence