Strain Fitness in Xanthobacter sp. DMC5 around GFF1164

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1163 and GFF1164 are separated by 93 nucleotidesGFF1164 and GFF1165 are separated by 234 nucleotides GFF1163 - Glutamine synthetase, at 1,260,814 to 1,262,229 GFF1163 GFF1164 - tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ, at 1,262,323 to 1,263,183 GFF1164 GFF1165 - Isocitrate dehydrogenase [NADP], at 1,263,418 to 1,264,632 GFF1165 Position (kb) 1262 1263 1264Strain fitness (log2 ratio) -1 0 1at 1262.681 kb on + strand, within GFF1164at 1262.681 kb on + strand, within GFF1164at 1262.761 kb on + strand, within GFF1164at 1262.768 kb on - strand, within GFF1164at 1262.781 kb on - strand, within GFF1164at 1262.781 kb on - strand, within GFF1164at 1263.097 kb on - strand, within GFF1164at 1263.322 kb on + strandat 1263.322 kb on + strandat 1263.381 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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1,262,681 + GFF1164 0.42 -0.1
1,262,681 + GFF1164 0.42 +1.0
1,262,761 + GFF1164 0.51 -0.5
1,262,768 - GFF1164 0.52 +0.7
1,262,781 - GFF1164 0.53 +0.5
1,262,781 - GFF1164 0.53 -0.5
1,263,097 - GFF1164 0.90 -0.1
1,263,322 + +0.0
1,263,322 + -0.3
1,263,381 + -1.0

Or see this region's nucleotide sequence