Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS16920 and ABZR88_RS16925 are separated by 537 nucleotides ABZR88_RS16925 and ABZR88_RS16930 are separated by 63 nucleotides
ABZR88_RS16920: ABZR88_RS16920 - Crp/Fnr family transcriptional regulator, at 4,150,437 to 4,151,087
_RS16920
ABZR88_RS16925: ABZR88_RS16925 - alginate export family protein, at 4,151,625 to 4,153,157
_RS16925
ABZR88_RS16930: ABZR88_RS16930 - MFS transporter, at 4,153,221 to 4,154,507
_RS16930
Position (kb)
4151
4152
4153
4154 Strain fitness (log2 ratio)
-2
-1
0
1 at 4150.665 kb on + strand, within ABZR88_RS16920 at 4150.678 kb on - strand, within ABZR88_RS16920 at 4150.827 kb on + strand, within ABZR88_RS16920 at 4150.844 kb on + strand, within ABZR88_RS16920 at 4150.845 kb on - strand, within ABZR88_RS16920 at 4150.922 kb on + strand, within ABZR88_RS16920 at 4150.949 kb on + strand, within ABZR88_RS16920 at 4150.950 kb on - strand, within ABZR88_RS16920 at 4150.973 kb on - strand, within ABZR88_RS16920 at 4151.712 kb on - strand at 4151.757 kb on + strand at 4151.837 kb on + strand, within ABZR88_RS16925 at 4151.960 kb on - strand, within ABZR88_RS16925 at 4151.960 kb on - strand, within ABZR88_RS16925 at 4151.964 kb on - strand, within ABZR88_RS16925 at 4152.106 kb on + strand, within ABZR88_RS16925 at 4152.156 kb on - strand, within ABZR88_RS16925 at 4152.173 kb on + strand, within ABZR88_RS16925 at 4152.177 kb on - strand, within ABZR88_RS16925 at 4152.192 kb on + strand, within ABZR88_RS16925 at 4152.378 kb on + strand, within ABZR88_RS16925 at 4152.378 kb on + strand, within ABZR88_RS16925 at 4152.484 kb on + strand, within ABZR88_RS16925 at 4152.550 kb on + strand, within ABZR88_RS16925 at 4152.562 kb on + strand, within ABZR88_RS16925 at 4152.601 kb on - strand, within ABZR88_RS16925 at 4152.673 kb on - strand, within ABZR88_RS16925 at 4152.743 kb on + strand, within ABZR88_RS16925 at 4152.800 kb on + strand, within ABZR88_RS16925 at 4152.801 kb on - strand, within ABZR88_RS16925 at 4152.801 kb on - strand, within ABZR88_RS16925 at 4153.039 kb on + strand at 4153.139 kb on + strand at 4153.250 kb on - strand at 4153.287 kb on - strand at 4153.540 kb on - strand, within ABZR88_RS16930 at 4153.634 kb on + strand, within ABZR88_RS16930 at 4153.635 kb on - strand, within ABZR88_RS16930 at 4153.810 kb on + strand, within ABZR88_RS16930
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 4,150,665 + ABZR88_RS16920 0.35 +1.1 4,150,678 - ABZR88_RS16920 0.37 +0.4 4,150,827 + ABZR88_RS16920 0.60 -0.0 4,150,844 + ABZR88_RS16920 0.63 +1.1 4,150,845 - ABZR88_RS16920 0.63 +0.8 4,150,922 + ABZR88_RS16920 0.75 +1.0 4,150,949 + ABZR88_RS16920 0.79 +0.7 4,150,950 - ABZR88_RS16920 0.79 +0.3 4,150,973 - ABZR88_RS16920 0.82 +0.8 4,151,712 - -0.5 4,151,757 + +0.1 4,151,837 + ABZR88_RS16925 0.14 +0.7 4,151,960 - ABZR88_RS16925 0.22 +0.0 4,151,960 - ABZR88_RS16925 0.22 +0.3 4,151,964 - ABZR88_RS16925 0.22 -0.6 4,152,106 + ABZR88_RS16925 0.31 +0.8 4,152,156 - ABZR88_RS16925 0.35 -0.2 4,152,173 + ABZR88_RS16925 0.36 +0.6 4,152,177 - ABZR88_RS16925 0.36 -0.2 4,152,192 + ABZR88_RS16925 0.37 +0.5 4,152,378 + ABZR88_RS16925 0.49 +0.2 4,152,378 + ABZR88_RS16925 0.49 +0.2 4,152,484 + ABZR88_RS16925 0.56 +0.2 4,152,550 + ABZR88_RS16925 0.60 -0.0 4,152,562 + ABZR88_RS16925 0.61 -0.0 4,152,601 - ABZR88_RS16925 0.64 -0.9 4,152,673 - ABZR88_RS16925 0.68 -0.6 4,152,743 + ABZR88_RS16925 0.73 +0.2 4,152,800 + ABZR88_RS16925 0.77 -0.2 4,152,801 - ABZR88_RS16925 0.77 -0.4 4,152,801 - ABZR88_RS16925 0.77 -0.7 4,153,039 + -0.3 4,153,139 + -2.0 4,153,250 - -0.1 4,153,287 - +1.0 4,153,540 - ABZR88_RS16930 0.25 -0.8 4,153,634 + ABZR88_RS16930 0.32 -0.4 4,153,635 - ABZR88_RS16930 0.32 +0.2 4,153,810 + ABZR88_RS16930 0.46 -0.4
Or see this region's nucleotide sequence