Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS16925

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS16920 and ABZR88_RS16925 are separated by 537 nucleotidesABZR88_RS16925 and ABZR88_RS16930 are separated by 63 nucleotides ABZR88_RS16920: ABZR88_RS16920 - Crp/Fnr family transcriptional regulator, at 4,150,437 to 4,151,087 _RS16920 ABZR88_RS16925: ABZR88_RS16925 - alginate export family protein, at 4,151,625 to 4,153,157 _RS16925 ABZR88_RS16930: ABZR88_RS16930 - MFS transporter, at 4,153,221 to 4,154,507 _RS16930 Position (kb) 4151 4152 4153 4154Strain fitness (log2 ratio) -2 -1 0 1at 4150.665 kb on + strand, within ABZR88_RS16920at 4150.678 kb on - strand, within ABZR88_RS16920at 4150.827 kb on + strand, within ABZR88_RS16920at 4150.844 kb on + strand, within ABZR88_RS16920at 4150.845 kb on - strand, within ABZR88_RS16920at 4150.922 kb on + strand, within ABZR88_RS16920at 4150.949 kb on + strand, within ABZR88_RS16920at 4150.950 kb on - strand, within ABZR88_RS16920at 4150.973 kb on - strand, within ABZR88_RS16920at 4151.712 kb on - strandat 4151.757 kb on + strandat 4151.837 kb on + strand, within ABZR88_RS16925at 4151.960 kb on - strand, within ABZR88_RS16925at 4151.960 kb on - strand, within ABZR88_RS16925at 4151.964 kb on - strand, within ABZR88_RS16925at 4152.106 kb on + strand, within ABZR88_RS16925at 4152.156 kb on - strand, within ABZR88_RS16925at 4152.173 kb on + strand, within ABZR88_RS16925at 4152.177 kb on - strand, within ABZR88_RS16925at 4152.192 kb on + strand, within ABZR88_RS16925at 4152.378 kb on + strand, within ABZR88_RS16925at 4152.378 kb on + strand, within ABZR88_RS16925at 4152.484 kb on + strand, within ABZR88_RS16925at 4152.550 kb on + strand, within ABZR88_RS16925at 4152.562 kb on + strand, within ABZR88_RS16925at 4152.601 kb on - strand, within ABZR88_RS16925at 4152.673 kb on - strand, within ABZR88_RS16925at 4152.743 kb on + strand, within ABZR88_RS16925at 4152.800 kb on + strand, within ABZR88_RS16925at 4152.801 kb on - strand, within ABZR88_RS16925at 4152.801 kb on - strand, within ABZR88_RS16925at 4153.039 kb on + strandat 4153.139 kb on + strandat 4153.250 kb on - strandat 4153.287 kb on - strandat 4153.540 kb on - strand, within ABZR88_RS16930at 4153.634 kb on + strand, within ABZR88_RS16930at 4153.635 kb on - strand, within ABZR88_RS16930at 4153.810 kb on + strand, within ABZR88_RS16930

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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4,150,665 + ABZR88_RS16920 0.35 +1.1
4,150,678 - ABZR88_RS16920 0.37 +0.4
4,150,827 + ABZR88_RS16920 0.60 -0.0
4,150,844 + ABZR88_RS16920 0.63 +1.1
4,150,845 - ABZR88_RS16920 0.63 +0.8
4,150,922 + ABZR88_RS16920 0.75 +1.0
4,150,949 + ABZR88_RS16920 0.79 +0.7
4,150,950 - ABZR88_RS16920 0.79 +0.3
4,150,973 - ABZR88_RS16920 0.82 +0.8
4,151,712 - -0.5
4,151,757 + +0.1
4,151,837 + ABZR88_RS16925 0.14 +0.7
4,151,960 - ABZR88_RS16925 0.22 +0.0
4,151,960 - ABZR88_RS16925 0.22 +0.3
4,151,964 - ABZR88_RS16925 0.22 -0.6
4,152,106 + ABZR88_RS16925 0.31 +0.8
4,152,156 - ABZR88_RS16925 0.35 -0.2
4,152,173 + ABZR88_RS16925 0.36 +0.6
4,152,177 - ABZR88_RS16925 0.36 -0.2
4,152,192 + ABZR88_RS16925 0.37 +0.5
4,152,378 + ABZR88_RS16925 0.49 +0.2
4,152,378 + ABZR88_RS16925 0.49 +0.2
4,152,484 + ABZR88_RS16925 0.56 +0.2
4,152,550 + ABZR88_RS16925 0.60 -0.0
4,152,562 + ABZR88_RS16925 0.61 -0.0
4,152,601 - ABZR88_RS16925 0.64 -0.9
4,152,673 - ABZR88_RS16925 0.68 -0.6
4,152,743 + ABZR88_RS16925 0.73 +0.2
4,152,800 + ABZR88_RS16925 0.77 -0.2
4,152,801 - ABZR88_RS16925 0.77 -0.4
4,152,801 - ABZR88_RS16925 0.77 -0.7
4,153,039 + -0.3
4,153,139 + -2.0
4,153,250 - -0.1
4,153,287 - +1.0
4,153,540 - ABZR88_RS16930 0.25 -0.8
4,153,634 + ABZR88_RS16930 0.32 -0.4
4,153,635 - ABZR88_RS16930 0.32 +0.2
4,153,810 + ABZR88_RS16930 0.46 -0.4

Or see this region's nucleotide sequence