Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS07755 and ABZR88_RS07760 are separated by 404 nucleotides ABZR88_RS07760 and ABZR88_RS07765 are separated by 106 nucleotides ABZR88_RS07765 and ABZR88_RS07770 are separated by 127 nucleotides ABZR88_RS07770 and ABZR88_RS07775 are separated by 11 nucleotides
ABZR88_RS07755: ABZR88_RS07755 - DUF4290 domain-containing protein, at 1,936,251 to 1,936,976
_RS07755
ABZR88_RS07760: ABZR88_RS07760 - SHOCT domain-containing protein, at 1,937,381 to 1,937,668
_RS07760
ABZR88_RS07765: ABZR88_RS07765 - hypothetical protein, at 1,937,775 to 1,937,930
_RS07765
ABZR88_RS07770: ABZR88_RS07770 - hypothetical protein, at 1,938,058 to 1,938,507
_RS07770
ABZR88_RS07775: ABZR88_RS07775 - dipeptidase, at 1,938,519 to 1,939,892
_RS07775
Position (kb) 1937
1938 Strain fitness (log2 ratio) -1
0
1
2 at 1936.860 kb on - strand, within ABZR88_RS07755 at 1936.877 kb on - strand, within ABZR88_RS07755 at 1936.881 kb on + strand, within ABZR88_RS07755 at 1936.934 kb on + strand at 1937.033 kb on + strand at 1937.034 kb on - strand at 1937.034 kb on - strand at 1937.106 kb on - strand at 1937.291 kb on + strand at 1937.523 kb on + strand, within ABZR88_RS07760 at 1937.569 kb on + strand, within ABZR88_RS07760 at 1937.599 kb on + strand, within ABZR88_RS07760 at 1937.599 kb on + strand, within ABZR88_RS07760 at 1937.606 kb on + strand, within ABZR88_RS07760 at 1937.607 kb on - strand, within ABZR88_RS07760 at 1938.047 kb on + strand at 1938.068 kb on - strand at 1938.239 kb on + strand, within ABZR88_RS07770 at 1938.240 kb on - strand, within ABZR88_RS07770 at 1938.312 kb on - strand, within ABZR88_RS07770 at 1938.578 kb on + strand at 1938.579 kb on - strand at 1938.837 kb on - strand, within ABZR88_RS07775 at 1938.839 kb on - strand, within ABZR88_RS07775
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 1,936,860 - ABZR88_RS07755 0.84 +1.5 1,936,877 - ABZR88_RS07755 0.86 +1.7 1,936,881 + ABZR88_RS07755 0.87 +2.0 1,936,934 + +1.9 1,937,033 + +0.2 1,937,034 - +0.0 1,937,034 - -0.4 1,937,106 - +0.3 1,937,291 + +1.2 1,937,523 + ABZR88_RS07760 0.49 +0.9 1,937,569 + ABZR88_RS07760 0.65 -0.5 1,937,599 + ABZR88_RS07760 0.76 -0.1 1,937,599 + ABZR88_RS07760 0.76 -0.8 1,937,606 + ABZR88_RS07760 0.78 -0.6 1,937,607 - ABZR88_RS07760 0.78 -0.0 1,938,047 + +0.1 1,938,068 - -0.3 1,938,239 + ABZR88_RS07770 0.40 -0.1 1,938,240 - ABZR88_RS07770 0.40 +0.1 1,938,312 - ABZR88_RS07770 0.56 -0.4 1,938,578 + -0.4 1,938,579 - -0.7 1,938,837 - ABZR88_RS07775 0.23 -0.8 1,938,839 - ABZR88_RS07775 0.23 +0.8
Or see this region's nucleotide sequence