Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS21085 and ABZR88_RS21090 are separated by 275 nucleotides ABZR88_RS21090 and ABZR88_RS21095 are separated by 233 nucleotides ABZR88_RS21095 and ABZR88_RS21100 are separated by 109 nucleotides ABZR88_RS21100 and ABZR88_RS21105 are separated by 10 nucleotides
ABZR88_RS21085: ABZR88_RS21085 - hypothetical protein, at 5,097,780 to 5,098,328
_RS21085
ABZR88_RS21090: ABZR88_RS21090 - hypothetical protein, at 5,098,604 to 5,099,092
_RS21090
ABZR88_RS21095: ABZR88_RS21095 - MarR family winged helix-turn-helix transcriptional regulator, at 5,099,326 to 5,099,760
_RS21095
ABZR88_RS21100: ABZR88_RS21100 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 5,099,870 to 5,100,391
_RS21100
ABZR88_RS21105: ABZR88_RS21105 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 5,100,402 to 5,101,346
_RS21105
Position (kb) 5099
5100 Strain fitness (log2 ratio) -1
0
1
2 at 5098.800 kb on + strand, within ABZR88_RS21090 at 5099.111 kb on - strand at 5099.142 kb on - strand at 5099.206 kb on - strand at 5099.228 kb on + strand at 5099.228 kb on + strand at 5099.230 kb on + strand at 5099.416 kb on - strand, within ABZR88_RS21095 at 5099.418 kb on + strand, within ABZR88_RS21095 at 5099.418 kb on + strand, within ABZR88_RS21095 at 5099.442 kb on + strand, within ABZR88_RS21095 at 5099.483 kb on + strand, within ABZR88_RS21095 at 5099.741 kb on + strand at 5099.746 kb on + strand at 5099.761 kb on + strand at 5099.996 kb on - strand, within ABZR88_RS21100 at 5100.012 kb on + strand, within ABZR88_RS21100 at 5100.059 kb on - strand, within ABZR88_RS21100 at 5100.063 kb on + strand, within ABZR88_RS21100 at 5100.064 kb on - strand, within ABZR88_RS21100 at 5100.078 kb on + strand, within ABZR88_RS21100 at 5100.203 kb on + strand, within ABZR88_RS21100 at 5100.516 kb on + strand, within ABZR88_RS21105 at 5100.573 kb on - strand, within ABZR88_RS21105 at 5100.623 kb on + strand, within ABZR88_RS21105 at 5100.747 kb on + strand, within ABZR88_RS21105
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 5,098,800 + ABZR88_RS21090 0.40 +0.9 5,099,111 - -0.0 5,099,142 - -0.3 5,099,206 - -0.2 5,099,228 + -0.2 5,099,228 + +1.1 5,099,230 + -0.2 5,099,416 - ABZR88_RS21095 0.21 -1.4 5,099,418 + ABZR88_RS21095 0.21 -0.2 5,099,418 + ABZR88_RS21095 0.21 -1.4 5,099,442 + ABZR88_RS21095 0.27 -1.1 5,099,483 + ABZR88_RS21095 0.36 -1.2 5,099,741 + -1.0 5,099,746 + -0.8 5,099,761 + +0.0 5,099,996 - ABZR88_RS21100 0.24 +0.3 5,100,012 + ABZR88_RS21100 0.27 -0.1 5,100,059 - ABZR88_RS21100 0.36 +0.1 5,100,063 + ABZR88_RS21100 0.37 +0.1 5,100,064 - ABZR88_RS21100 0.37 +0.3 5,100,078 + ABZR88_RS21100 0.40 -0.0 5,100,203 + ABZR88_RS21100 0.64 +0.8 5,100,516 + ABZR88_RS21105 0.12 +0.9 5,100,573 - ABZR88_RS21105 0.18 -1.4 5,100,623 + ABZR88_RS21105 0.23 +1.3 5,100,747 + ABZR88_RS21105 0.37 +1.9
Or see this region's nucleotide sequence