Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS09910 and ABZR88_RS09915 are separated by 100 nucleotides ABZR88_RS09915 and ABZR88_RS09920 are separated by 1 nucleotides ABZR88_RS09920 and ABZR88_RS09925 are separated by 94 nucleotides
ABZR88_RS09910: ABZR88_RS09910 - acetyl-CoA carboxylase biotin carboxylase subunit, at 2,459,835 to 2,461,322
_RS09910
ABZR88_RS09915: ABZR88_RS09915 - hypothetical protein, at 2,461,423 to 2,462,130
_RS09915
ABZR88_RS09920: ABZR88_RS09920 - VOC family protein, at 2,462,132 to 2,462,497
_RS09920
ABZR88_RS09925: ABZR88_RS09925 - ABC transporter ATP-binding protein, at 2,462,592 to 2,463,497
_RS09925
Position (kb)
2461
2462
2463 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2460.441 kb on + strand, within ABZR88_RS09910 at 2460.522 kb on - strand, within ABZR88_RS09910 at 2460.586 kb on - strand, within ABZR88_RS09910 at 2460.665 kb on + strand, within ABZR88_RS09910 at 2460.665 kb on + strand, within ABZR88_RS09910 at 2460.666 kb on - strand, within ABZR88_RS09910 at 2460.818 kb on + strand, within ABZR88_RS09910 at 2460.818 kb on + strand, within ABZR88_RS09910 at 2460.915 kb on - strand, within ABZR88_RS09910 at 2461.175 kb on + strand at 2461.234 kb on - strand at 2461.251 kb on - strand at 2461.336 kb on + strand at 2461.414 kb on - strand at 2461.492 kb on - strand at 2461.647 kb on + strand, within ABZR88_RS09915 at 2461.990 kb on + strand, within ABZR88_RS09915 at 2462.026 kb on + strand, within ABZR88_RS09915 at 2462.027 kb on - strand, within ABZR88_RS09915 at 2462.033 kb on - strand, within ABZR88_RS09915 at 2462.036 kb on - strand, within ABZR88_RS09915 at 2462.374 kb on + strand, within ABZR88_RS09920 at 2462.503 kb on - strand at 2462.505 kb on - strand at 2462.544 kb on + strand at 2462.545 kb on - strand at 2462.553 kb on - strand at 2462.563 kb on - strand at 2462.610 kb on - strand at 2462.650 kb on + strand at 2462.727 kb on - strand, within ABZR88_RS09925 at 2462.771 kb on + strand, within ABZR88_RS09925 at 2462.772 kb on - strand, within ABZR88_RS09925 at 2462.809 kb on + strand, within ABZR88_RS09925 at 2462.814 kb on + strand, within ABZR88_RS09925 at 2462.892 kb on - strand, within ABZR88_RS09925 at 2462.941 kb on + strand, within ABZR88_RS09925 at 2463.096 kb on - strand, within ABZR88_RS09925
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 2,460,441 + ABZR88_RS09910 0.41 -0.1 2,460,522 - ABZR88_RS09910 0.46 -0.2 2,460,586 - ABZR88_RS09910 0.50 +2.1 2,460,665 + ABZR88_RS09910 0.56 +0.2 2,460,665 + ABZR88_RS09910 0.56 -0.1 2,460,666 - ABZR88_RS09910 0.56 +1.0 2,460,818 + ABZR88_RS09910 0.66 +0.5 2,460,818 + ABZR88_RS09910 0.66 -0.5 2,460,915 - ABZR88_RS09910 0.73 -0.4 2,461,175 + -0.7 2,461,234 - -0.4 2,461,251 - -0.0 2,461,336 + -0.3 2,461,414 - -0.4 2,461,492 - +0.1 2,461,647 + ABZR88_RS09915 0.32 +0.0 2,461,990 + ABZR88_RS09915 0.80 -0.5 2,462,026 + ABZR88_RS09915 0.85 -0.7 2,462,027 - ABZR88_RS09915 0.85 -0.0 2,462,033 - ABZR88_RS09915 0.86 -0.1 2,462,036 - ABZR88_RS09915 0.87 -0.2 2,462,374 + ABZR88_RS09920 0.66 +0.1 2,462,503 - -0.1 2,462,505 - +0.3 2,462,544 + -0.4 2,462,545 - +0.0 2,462,553 - -0.3 2,462,563 - -0.9 2,462,610 - -3.5 2,462,650 + +1.4 2,462,727 - ABZR88_RS09925 0.15 -0.2 2,462,771 + ABZR88_RS09925 0.20 -0.6 2,462,772 - ABZR88_RS09925 0.20 -2.2 2,462,809 + ABZR88_RS09925 0.24 -2.7 2,462,814 + ABZR88_RS09925 0.25 +0.1 2,462,892 - ABZR88_RS09925 0.33 -0.1 2,462,941 + ABZR88_RS09925 0.39 -1.0 2,463,096 - ABZR88_RS09925 0.56 -1.5
Or see this region's nucleotide sequence