Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS09915

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS09910 and ABZR88_RS09915 are separated by 100 nucleotidesABZR88_RS09915 and ABZR88_RS09920 are separated by 1 nucleotidesABZR88_RS09920 and ABZR88_RS09925 are separated by 94 nucleotides ABZR88_RS09910: ABZR88_RS09910 - acetyl-CoA carboxylase biotin carboxylase subunit, at 2,459,835 to 2,461,322 _RS09910 ABZR88_RS09915: ABZR88_RS09915 - hypothetical protein, at 2,461,423 to 2,462,130 _RS09915 ABZR88_RS09920: ABZR88_RS09920 - VOC family protein, at 2,462,132 to 2,462,497 _RS09920 ABZR88_RS09925: ABZR88_RS09925 - ABC transporter ATP-binding protein, at 2,462,592 to 2,463,497 _RS09925 Position (kb) 2461 2462 2463Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2460.441 kb on + strand, within ABZR88_RS09910at 2460.522 kb on - strand, within ABZR88_RS09910at 2460.586 kb on - strand, within ABZR88_RS09910at 2460.665 kb on + strand, within ABZR88_RS09910at 2460.665 kb on + strand, within ABZR88_RS09910at 2460.666 kb on - strand, within ABZR88_RS09910at 2460.818 kb on + strand, within ABZR88_RS09910at 2460.818 kb on + strand, within ABZR88_RS09910at 2460.915 kb on - strand, within ABZR88_RS09910at 2461.175 kb on + strandat 2461.234 kb on - strandat 2461.251 kb on - strandat 2461.336 kb on + strandat 2461.414 kb on - strandat 2461.492 kb on - strandat 2461.647 kb on + strand, within ABZR88_RS09915at 2461.990 kb on + strand, within ABZR88_RS09915at 2462.026 kb on + strand, within ABZR88_RS09915at 2462.027 kb on - strand, within ABZR88_RS09915at 2462.033 kb on - strand, within ABZR88_RS09915at 2462.036 kb on - strand, within ABZR88_RS09915at 2462.374 kb on + strand, within ABZR88_RS09920at 2462.503 kb on - strandat 2462.505 kb on - strandat 2462.544 kb on + strandat 2462.545 kb on - strandat 2462.553 kb on - strandat 2462.563 kb on - strandat 2462.610 kb on - strandat 2462.650 kb on + strandat 2462.727 kb on - strand, within ABZR88_RS09925at 2462.771 kb on + strand, within ABZR88_RS09925at 2462.772 kb on - strand, within ABZR88_RS09925at 2462.809 kb on + strand, within ABZR88_RS09925at 2462.814 kb on + strand, within ABZR88_RS09925at 2462.892 kb on - strand, within ABZR88_RS09925at 2462.941 kb on + strand, within ABZR88_RS09925at 2463.096 kb on - strand, within ABZR88_RS09925

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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2,460,441 + ABZR88_RS09910 0.41 -0.1
2,460,522 - ABZR88_RS09910 0.46 -0.2
2,460,586 - ABZR88_RS09910 0.50 +2.1
2,460,665 + ABZR88_RS09910 0.56 +0.2
2,460,665 + ABZR88_RS09910 0.56 -0.1
2,460,666 - ABZR88_RS09910 0.56 +1.0
2,460,818 + ABZR88_RS09910 0.66 +0.5
2,460,818 + ABZR88_RS09910 0.66 -0.5
2,460,915 - ABZR88_RS09910 0.73 -0.4
2,461,175 + -0.7
2,461,234 - -0.4
2,461,251 - -0.0
2,461,336 + -0.3
2,461,414 - -0.4
2,461,492 - +0.1
2,461,647 + ABZR88_RS09915 0.32 +0.0
2,461,990 + ABZR88_RS09915 0.80 -0.5
2,462,026 + ABZR88_RS09915 0.85 -0.7
2,462,027 - ABZR88_RS09915 0.85 -0.0
2,462,033 - ABZR88_RS09915 0.86 -0.1
2,462,036 - ABZR88_RS09915 0.87 -0.2
2,462,374 + ABZR88_RS09920 0.66 +0.1
2,462,503 - -0.1
2,462,505 - +0.3
2,462,544 + -0.4
2,462,545 - +0.0
2,462,553 - -0.3
2,462,563 - -0.9
2,462,610 - -3.5
2,462,650 + +1.4
2,462,727 - ABZR88_RS09925 0.15 -0.2
2,462,771 + ABZR88_RS09925 0.20 -0.6
2,462,772 - ABZR88_RS09925 0.20 -2.2
2,462,809 + ABZR88_RS09925 0.24 -2.7
2,462,814 + ABZR88_RS09925 0.25 +0.1
2,462,892 - ABZR88_RS09925 0.33 -0.1
2,462,941 + ABZR88_RS09925 0.39 -1.0
2,463,096 - ABZR88_RS09925 0.56 -1.5

Or see this region's nucleotide sequence