Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS00060 and ABZR88_RS00065 are separated by 87 nucleotides ABZR88_RS00065 and ABZR88_RS00070 overlap by 4 nucleotides ABZR88_RS00070 and ABZR88_RS00075 are separated by 442 nucleotides
ABZR88_RS00060: ABZR88_RS00060 - DUF5009 domain-containing protein, at 11,436 to 12,620
_RS00060
ABZR88_RS00065: ABZR88_RS00065 - GDSL-type esterase/lipase family protein, at 12,708 to 13,304
_RS00065
ABZR88_RS00070: ABZR88_RS00070 - esterase family protein, at 13,301 to 14,020
_RS00070
ABZR88_RS00075: ABZR88_RS00075 - RNA polymerase sigma factor, at 14,463 to 15,041
_RS00075
Position (kb) 13
14
15 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 12.350 kb on + strand, within ABZR88_RS00060 at 12.363 kb on + strand, within ABZR88_RS00060 at 12.542 kb on + strand at 12.655 kb on + strand at 12.873 kb on - strand, within ABZR88_RS00065 at 12.873 kb on - strand, within ABZR88_RS00065 at 12.873 kb on - strand, within ABZR88_RS00065 at 12.918 kb on + strand, within ABZR88_RS00065 at 12.941 kb on - strand, within ABZR88_RS00065 at 12.942 kb on + strand, within ABZR88_RS00065 at 13.258 kb on - strand at 13.277 kb on - strand at 13.298 kb on + strand at 13.387 kb on - strand, within ABZR88_RS00070 at 13.441 kb on - strand, within ABZR88_RS00070 at 13.580 kb on - strand, within ABZR88_RS00070 at 13.593 kb on + strand, within ABZR88_RS00070 at 13.594 kb on - strand, within ABZR88_RS00070 at 13.624 kb on + strand, within ABZR88_RS00070 at 13.904 kb on - strand, within ABZR88_RS00070 at 13.939 kb on + strand, within ABZR88_RS00070 at 13.970 kb on + strand at 13.988 kb on + strand at 14.126 kb on - strand at 14.133 kb on - strand at 14.207 kb on - strand at 14.325 kb on - strand at 14.456 kb on - strand at 14.494 kb on - strand at 14.495 kb on + strand at 14.497 kb on + strand at 14.497 kb on + strand at 14.498 kb on - strand at 14.498 kb on - strand at 14.554 kb on - strand, within ABZR88_RS00075 at 14.840 kb on + strand, within ABZR88_RS00075 at 14.840 kb on + strand, within ABZR88_RS00075 at 14.948 kb on - strand, within ABZR88_RS00075 at 14.957 kb on - strand, within ABZR88_RS00075 at 14.957 kb on - strand, within ABZR88_RS00075 at 14.994 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 12,350 + ABZR88_RS00060 0.77 -0.1 12,363 + ABZR88_RS00060 0.78 -0.0 12,542 + +0.1 12,655 + -0.0 12,873 - ABZR88_RS00065 0.28 +0.0 12,873 - ABZR88_RS00065 0.28 +0.1 12,873 - ABZR88_RS00065 0.28 +0.2 12,918 + ABZR88_RS00065 0.35 -0.7 12,941 - ABZR88_RS00065 0.39 -0.3 12,942 + ABZR88_RS00065 0.39 -0.7 13,258 - -0.8 13,277 - -0.6 13,298 + -0.5 13,387 - ABZR88_RS00070 0.12 -2.9 13,441 - ABZR88_RS00070 0.19 +1.5 13,580 - ABZR88_RS00070 0.39 +0.9 13,593 + ABZR88_RS00070 0.41 -0.6 13,594 - ABZR88_RS00070 0.41 +0.3 13,624 + ABZR88_RS00070 0.45 -0.2 13,904 - ABZR88_RS00070 0.84 +0.4 13,939 + ABZR88_RS00070 0.89 +0.2 13,970 + +0.6 13,988 + -0.6 14,126 - +0.4 14,133 - -0.2 14,207 - -0.3 14,325 - +0.4 14,456 - -0.3 14,494 - -0.6 14,495 + -0.1 14,497 + -0.6 14,497 + -0.9 14,498 - -0.4 14,498 - -0.1 14,554 - ABZR88_RS00075 0.16 -0.6 14,840 + ABZR88_RS00075 0.65 +0.2 14,840 + ABZR88_RS00075 0.65 +0.1 14,948 - ABZR88_RS00075 0.84 +0.2 14,957 - ABZR88_RS00075 0.85 -0.1 14,957 - ABZR88_RS00075 0.85 +0.6 14,994 - +0.2
Or see this region's nucleotide sequence