Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS16520 and ABZR88_RS16525 are separated by 42 nucleotides ABZR88_RS16525 and ABZR88_RS16530 overlap by 8 nucleotides ABZR88_RS16530 and ABZR88_RS16535 overlap by 4 nucleotides ABZR88_RS16535 and ABZR88_RS16540 overlap by 1 nucleotides
ABZR88_RS16520: ABZR88_RS16520 - hypothetical protein, at 4,055,611 to 4,055,820
_RS16520
ABZR88_RS16525: ABZR88_RS16525 - cytochrome b5 domain-containing protein, at 4,055,863 to 4,056,099
_RS16525
ABZR88_RS16530: ABZR88_RS16530 - lycopene cyclase domain-containing protein, at 4,056,092 to 4,056,799
_RS16530
ABZR88_RS16535: ABZR88_RS16535 - hypothetical protein, at 4,056,796 to 4,057,323
_RS16535
ABZR88_RS16540: ABZR88_RS16540 - phytoene/squalene synthase family protein, at 4,057,323 to 4,058,171
_RS16540
Position (kb) 4056
4057
4058 Strain fitness (log2 ratio) -1
0
1 at 4055.842 kb on + strand at 4056.043 kb on - strand, within ABZR88_RS16525 at 4056.055 kb on - strand, within ABZR88_RS16525 at 4056.078 kb on + strand at 4056.239 kb on - strand, within ABZR88_RS16530 at 4056.241 kb on - strand, within ABZR88_RS16530 at 4056.357 kb on + strand, within ABZR88_RS16530 at 4056.397 kb on + strand, within ABZR88_RS16530 at 4056.399 kb on + strand, within ABZR88_RS16530 at 4056.489 kb on - strand, within ABZR88_RS16530 at 4056.498 kb on + strand, within ABZR88_RS16530 at 4056.499 kb on - strand, within ABZR88_RS16530 at 4056.781 kb on + strand at 4056.842 kb on - strand at 4056.949 kb on - strand, within ABZR88_RS16535 at 4056.992 kb on + strand, within ABZR88_RS16535 at 4057.096 kb on - strand, within ABZR88_RS16535 at 4057.196 kb on + strand, within ABZR88_RS16535 at 4057.465 kb on + strand, within ABZR88_RS16540 at 4057.555 kb on - strand, within ABZR88_RS16540 at 4057.709 kb on - strand, within ABZR88_RS16540 at 4057.775 kb on - strand, within ABZR88_RS16540 at 4057.780 kb on + strand, within ABZR88_RS16540 at 4057.885 kb on - strand, within ABZR88_RS16540
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 4,055,842 + +0.0 4,056,043 - ABZR88_RS16525 0.76 -0.1 4,056,055 - ABZR88_RS16525 0.81 -0.3 4,056,078 + -0.6 4,056,239 - ABZR88_RS16530 0.21 +0.4 4,056,241 - ABZR88_RS16530 0.21 +0.1 4,056,357 + ABZR88_RS16530 0.37 +0.1 4,056,397 + ABZR88_RS16530 0.43 +0.1 4,056,399 + ABZR88_RS16530 0.43 +0.1 4,056,489 - ABZR88_RS16530 0.56 +0.3 4,056,498 + ABZR88_RS16530 0.57 +0.4 4,056,499 - ABZR88_RS16530 0.57 +0.1 4,056,781 + +0.3 4,056,842 - -0.5 4,056,949 - ABZR88_RS16535 0.29 +0.4 4,056,992 + ABZR88_RS16535 0.37 -0.1 4,057,096 - ABZR88_RS16535 0.57 +0.1 4,057,196 + ABZR88_RS16535 0.76 +0.0 4,057,465 + ABZR88_RS16540 0.17 +0.1 4,057,555 - ABZR88_RS16540 0.27 -0.0 4,057,709 - ABZR88_RS16540 0.45 +0.1 4,057,775 - ABZR88_RS16540 0.53 +0.3 4,057,780 + ABZR88_RS16540 0.54 -0.2 4,057,885 - ABZR88_RS16540 0.66 +0.1
Or see this region's nucleotide sequence