Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS07310

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS07305 and ABZR88_RS07310 are separated by 265 nucleotidesABZR88_RS07310 and ABZR88_RS07315 are separated by 88 nucleotides ABZR88_RS07305: ABZR88_RS07305 - hybrid sensor histidine kinase/response regulator transcription factor, at 1,810,733 to 1,815,118 _RS07305 ABZR88_RS07310: ABZR88_RS07310 - glycoside hydrolase family 28 protein, at 1,815,384 to 1,817,042 _RS07310 ABZR88_RS07315: ABZR88_RS07315 - RagB/SusD family nutrient uptake outer membrane protein, at 1,817,131 to 1,818,858 _RS07315 Position (kb) 1815 1816 1817 1818Strain fitness (log2 ratio) -1 0 1at 1814.486 kb on - strand, within ABZR88_RS07305at 1814.536 kb on + strand, within ABZR88_RS07305at 1814.568 kb on + strand, within ABZR88_RS07305at 1814.575 kb on - strand, within ABZR88_RS07305at 1814.642 kb on + strand, within ABZR88_RS07305at 1814.935 kb on - strandat 1814.951 kb on - strandat 1814.999 kb on - strandat 1815.004 kb on + strandat 1815.116 kb on + strandat 1815.204 kb on - strandat 1815.239 kb on - strandat 1815.468 kb on + strandat 1815.518 kb on + strandat 1815.689 kb on + strand, within ABZR88_RS07310at 1815.690 kb on - strand, within ABZR88_RS07310at 1815.690 kb on - strand, within ABZR88_RS07310at 1815.691 kb on + strand, within ABZR88_RS07310at 1815.767 kb on + strand, within ABZR88_RS07310at 1816.043 kb on - strand, within ABZR88_RS07310at 1816.107 kb on - strand, within ABZR88_RS07310at 1816.511 kb on + strand, within ABZR88_RS07310at 1816.572 kb on + strand, within ABZR88_RS07310at 1816.667 kb on + strand, within ABZR88_RS07310at 1816.814 kb on - strand, within ABZR88_RS07310at 1816.961 kb on + strandat 1817.050 kb on - strandat 1817.055 kb on + strandat 1817.132 kb on + strandat 1817.227 kb on + strandat 1817.243 kb on + strandat 1817.244 kb on - strandat 1817.247 kb on + strandat 1817.329 kb on + strand, within ABZR88_RS07315at 1817.385 kb on + strand, within ABZR88_RS07315at 1817.496 kb on - strand, within ABZR88_RS07315at 1817.753 kb on + strand, within ABZR88_RS07315at 1817.754 kb on - strand, within ABZR88_RS07315at 1817.790 kb on + strand, within ABZR88_RS07315at 1817.792 kb on + strand, within ABZR88_RS07315at 1817.956 kb on - strand, within ABZR88_RS07315at 1818.019 kb on - strand, within ABZR88_RS07315

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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1,814,486 - ABZR88_RS07305 0.86 +0.4
1,814,536 + ABZR88_RS07305 0.87 +0.2
1,814,568 + ABZR88_RS07305 0.87 +0.1
1,814,575 - ABZR88_RS07305 0.88 -0.1
1,814,642 + ABZR88_RS07305 0.89 -1.0
1,814,935 - +0.0
1,814,951 - -0.4
1,814,999 - -0.7
1,815,004 + -0.4
1,815,116 + -0.2
1,815,204 - -0.3
1,815,239 - +0.0
1,815,468 + +0.1
1,815,518 + -0.0
1,815,689 + ABZR88_RS07310 0.18 -0.0
1,815,690 - ABZR88_RS07310 0.18 +0.1
1,815,690 - ABZR88_RS07310 0.18 +1.2
1,815,691 + ABZR88_RS07310 0.19 +0.1
1,815,767 + ABZR88_RS07310 0.23 +0.1
1,816,043 - ABZR88_RS07310 0.40 -0.1
1,816,107 - ABZR88_RS07310 0.44 +0.1
1,816,511 + ABZR88_RS07310 0.68 -0.7
1,816,572 + ABZR88_RS07310 0.72 +0.1
1,816,667 + ABZR88_RS07310 0.77 +0.0
1,816,814 - ABZR88_RS07310 0.86 -0.1
1,816,961 + -0.1
1,817,050 - +0.1
1,817,055 + -0.3
1,817,132 + -0.3
1,817,227 + +0.0
1,817,243 + -0.1
1,817,244 - +0.0
1,817,247 + +0.3
1,817,329 + ABZR88_RS07315 0.11 +0.3
1,817,385 + ABZR88_RS07315 0.15 -0.6
1,817,496 - ABZR88_RS07315 0.21 -0.0
1,817,753 + ABZR88_RS07315 0.36 -0.1
1,817,754 - ABZR88_RS07315 0.36 -0.1
1,817,790 + ABZR88_RS07315 0.38 -0.4
1,817,792 + ABZR88_RS07315 0.38 +0.0
1,817,956 - ABZR88_RS07315 0.48 -0.0
1,818,019 - ABZR88_RS07315 0.51 +0.1

Or see this region's nucleotide sequence