Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS07305 and ABZR88_RS07310 are separated by 265 nucleotides ABZR88_RS07310 and ABZR88_RS07315 are separated by 88 nucleotides
ABZR88_RS07305: ABZR88_RS07305 - hybrid sensor histidine kinase/response regulator transcription factor, at 1,810,733 to 1,815,118
_RS07305
ABZR88_RS07310: ABZR88_RS07310 - glycoside hydrolase family 28 protein, at 1,815,384 to 1,817,042
_RS07310
ABZR88_RS07315: ABZR88_RS07315 - RagB/SusD family nutrient uptake outer membrane protein, at 1,817,131 to 1,818,858
_RS07315
Position (kb)
1815
1816
1817
1818 Strain fitness (log2 ratio)
-1
0
1 at 1814.486 kb on - strand, within ABZR88_RS07305 at 1814.536 kb on + strand, within ABZR88_RS07305 at 1814.568 kb on + strand, within ABZR88_RS07305 at 1814.575 kb on - strand, within ABZR88_RS07305 at 1814.642 kb on + strand, within ABZR88_RS07305 at 1814.935 kb on - strand at 1814.951 kb on - strand at 1814.999 kb on - strand at 1815.004 kb on + strand at 1815.116 kb on + strand at 1815.204 kb on - strand at 1815.239 kb on - strand at 1815.468 kb on + strand at 1815.518 kb on + strand at 1815.689 kb on + strand, within ABZR88_RS07310 at 1815.690 kb on - strand, within ABZR88_RS07310 at 1815.690 kb on - strand, within ABZR88_RS07310 at 1815.691 kb on + strand, within ABZR88_RS07310 at 1815.767 kb on + strand, within ABZR88_RS07310 at 1816.043 kb on - strand, within ABZR88_RS07310 at 1816.107 kb on - strand, within ABZR88_RS07310 at 1816.511 kb on + strand, within ABZR88_RS07310 at 1816.572 kb on + strand, within ABZR88_RS07310 at 1816.667 kb on + strand, within ABZR88_RS07310 at 1816.814 kb on - strand, within ABZR88_RS07310 at 1816.961 kb on + strand at 1817.050 kb on - strand at 1817.055 kb on + strand at 1817.132 kb on + strand at 1817.227 kb on + strand at 1817.243 kb on + strand at 1817.244 kb on - strand at 1817.247 kb on + strand at 1817.329 kb on + strand, within ABZR88_RS07315 at 1817.385 kb on + strand, within ABZR88_RS07315 at 1817.496 kb on - strand, within ABZR88_RS07315 at 1817.753 kb on + strand, within ABZR88_RS07315 at 1817.754 kb on - strand, within ABZR88_RS07315 at 1817.790 kb on + strand, within ABZR88_RS07315 at 1817.792 kb on + strand, within ABZR88_RS07315 at 1817.956 kb on - strand, within ABZR88_RS07315 at 1818.019 kb on - strand, within ABZR88_RS07315
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 1,814,486 - ABZR88_RS07305 0.86 +0.4 1,814,536 + ABZR88_RS07305 0.87 +0.2 1,814,568 + ABZR88_RS07305 0.87 +0.1 1,814,575 - ABZR88_RS07305 0.88 -0.1 1,814,642 + ABZR88_RS07305 0.89 -1.0 1,814,935 - +0.0 1,814,951 - -0.4 1,814,999 - -0.7 1,815,004 + -0.4 1,815,116 + -0.2 1,815,204 - -0.3 1,815,239 - +0.0 1,815,468 + +0.1 1,815,518 + -0.0 1,815,689 + ABZR88_RS07310 0.18 -0.0 1,815,690 - ABZR88_RS07310 0.18 +0.1 1,815,690 - ABZR88_RS07310 0.18 +1.2 1,815,691 + ABZR88_RS07310 0.19 +0.1 1,815,767 + ABZR88_RS07310 0.23 +0.1 1,816,043 - ABZR88_RS07310 0.40 -0.1 1,816,107 - ABZR88_RS07310 0.44 +0.1 1,816,511 + ABZR88_RS07310 0.68 -0.7 1,816,572 + ABZR88_RS07310 0.72 +0.1 1,816,667 + ABZR88_RS07310 0.77 +0.0 1,816,814 - ABZR88_RS07310 0.86 -0.1 1,816,961 + -0.1 1,817,050 - +0.1 1,817,055 + -0.3 1,817,132 + -0.3 1,817,227 + +0.0 1,817,243 + -0.1 1,817,244 - +0.0 1,817,247 + +0.3 1,817,329 + ABZR88_RS07315 0.11 +0.3 1,817,385 + ABZR88_RS07315 0.15 -0.6 1,817,496 - ABZR88_RS07315 0.21 -0.0 1,817,753 + ABZR88_RS07315 0.36 -0.1 1,817,754 - ABZR88_RS07315 0.36 -0.1 1,817,790 + ABZR88_RS07315 0.38 -0.4 1,817,792 + ABZR88_RS07315 0.38 +0.0 1,817,956 - ABZR88_RS07315 0.48 -0.0 1,818,019 - ABZR88_RS07315 0.51 +0.1
Or see this region's nucleotide sequence