Experiment: R2A 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS18460 and ABZR88_RS18465 overlap by 4 nucleotides ABZR88_RS18465 and ABZR88_RS18470 are separated by 18 nucleotides ABZR88_RS18470 and ABZR88_RS18475 are separated by 113 nucleotides ABZR88_RS18475 and ABZR88_RS18480 are separated by 261 nucleotides
ABZR88_RS18460: ABZR88_RS18460 - RDD family protein, at 4,504,649 to 4,505,422
_RS18460
ABZR88_RS18465: ABZR88_RS18465 - DUF2752 domain-containing protein, at 4,505,419 to 4,505,739
_RS18465
ABZR88_RS18470: ABZR88_RS18470 - DUF5684 domain-containing protein, at 4,505,758 to 4,506,210
_RS18470
ABZR88_RS18475: ABZR88_RS18475 - L-serine ammonia-lyase, at 4,506,324 to 4,507,751
_RS18475
ABZR88_RS18480: ABZR88_RS18480 - gliding motility-associated C-terminal domain-containing protein, at 4,508,013 to 4,510,070
_RS18480
Position (kb) 4506
4507
4508 Strain fitness (log2 ratio) -1
0
1 at 4505.341 kb on - strand, within ABZR88_RS18460 at 4505.426 kb on + strand at 4505.454 kb on + strand, within ABZR88_RS18465 at 4505.557 kb on + strand, within ABZR88_RS18465 at 4505.580 kb on - strand, within ABZR88_RS18465 at 4505.621 kb on - strand, within ABZR88_RS18465 at 4505.669 kb on + strand, within ABZR88_RS18465 at 4505.743 kb on + strand at 4505.846 kb on + strand, within ABZR88_RS18470 at 4505.971 kb on + strand, within ABZR88_RS18470 at 4506.043 kb on - strand, within ABZR88_RS18470 at 4506.044 kb on + strand, within ABZR88_RS18470 at 4506.045 kb on - strand, within ABZR88_RS18470 at 4506.113 kb on - strand, within ABZR88_RS18470 at 4506.136 kb on + strand, within ABZR88_RS18470 at 4506.261 kb on + strand at 4506.306 kb on + strand at 4506.535 kb on + strand, within ABZR88_RS18475 at 4506.536 kb on - strand, within ABZR88_RS18475 at 4506.763 kb on - strand, within ABZR88_RS18475 at 4506.790 kb on + strand, within ABZR88_RS18475 at 4506.845 kb on - strand, within ABZR88_RS18475 at 4506.989 kb on + strand, within ABZR88_RS18475 at 4507.099 kb on - strand, within ABZR88_RS18475 at 4507.267 kb on - strand, within ABZR88_RS18475 at 4507.301 kb on + strand, within ABZR88_RS18475 at 4507.346 kb on - strand, within ABZR88_RS18475 at 4507.619 kb on + strand at 4507.810 kb on + strand at 4507.859 kb on - strand at 4507.963 kb on - strand at 4508.030 kb on - strand at 4508.163 kb on - strand at 4508.222 kb on + strand, within ABZR88_RS18480 at 4508.286 kb on + strand, within ABZR88_RS18480 at 4508.287 kb on - strand, within ABZR88_RS18480 at 4508.310 kb on - strand, within ABZR88_RS18480 at 4508.310 kb on - strand, within ABZR88_RS18480 at 4508.414 kb on + strand, within ABZR88_RS18480 at 4508.466 kb on - strand, within ABZR88_RS18480 at 4508.505 kb on - strand, within ABZR88_RS18480 at 4508.515 kb on + strand, within ABZR88_RS18480 at 4508.516 kb on - strand, within ABZR88_RS18480 at 4508.586 kb on - strand, within ABZR88_RS18480 at 4508.664 kb on + strand, within ABZR88_RS18480 at 4508.748 kb on - strand, within ABZR88_RS18480 at 4508.748 kb on - strand, within ABZR88_RS18480
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 30C remove 4,505,341 - ABZR88_RS18460 0.89 +0.2 4,505,426 + -0.1 4,505,454 + ABZR88_RS18465 0.11 -0.1 4,505,557 + ABZR88_RS18465 0.43 -0.3 4,505,580 - ABZR88_RS18465 0.50 -0.4 4,505,621 - ABZR88_RS18465 0.63 -0.0 4,505,669 + ABZR88_RS18465 0.78 +0.5 4,505,743 + +0.1 4,505,846 + ABZR88_RS18470 0.19 +0.1 4,505,971 + ABZR88_RS18470 0.47 +0.7 4,506,043 - ABZR88_RS18470 0.63 -0.0 4,506,044 + ABZR88_RS18470 0.63 -0.1 4,506,045 - ABZR88_RS18470 0.63 -1.1 4,506,113 - ABZR88_RS18470 0.78 -0.2 4,506,136 + ABZR88_RS18470 0.83 -1.1 4,506,261 + -0.5 4,506,306 + +0.1 4,506,535 + ABZR88_RS18475 0.15 -1.4 4,506,536 - ABZR88_RS18475 0.15 -0.4 4,506,763 - ABZR88_RS18475 0.31 -0.4 4,506,790 + ABZR88_RS18475 0.33 -0.2 4,506,845 - ABZR88_RS18475 0.36 +0.0 4,506,989 + ABZR88_RS18475 0.47 -0.5 4,507,099 - ABZR88_RS18475 0.54 -0.1 4,507,267 - ABZR88_RS18475 0.66 -0.4 4,507,301 + ABZR88_RS18475 0.68 -0.2 4,507,346 - ABZR88_RS18475 0.72 -0.2 4,507,619 + +0.8 4,507,810 + -0.2 4,507,859 - -0.4 4,507,963 - -0.1 4,508,030 - -0.5 4,508,163 - +0.1 4,508,222 + ABZR88_RS18480 0.10 +0.4 4,508,286 + ABZR88_RS18480 0.13 +0.9 4,508,287 - ABZR88_RS18480 0.13 +0.1 4,508,310 - ABZR88_RS18480 0.14 -0.2 4,508,310 - ABZR88_RS18480 0.14 +0.1 4,508,414 + ABZR88_RS18480 0.19 +0.0 4,508,466 - ABZR88_RS18480 0.22 +0.1 4,508,505 - ABZR88_RS18480 0.24 +0.3 4,508,515 + ABZR88_RS18480 0.24 -0.0 4,508,516 - ABZR88_RS18480 0.24 +0.2 4,508,586 - ABZR88_RS18480 0.28 +0.0 4,508,664 + ABZR88_RS18480 0.32 -0.0 4,508,748 - ABZR88_RS18480 0.36 -0.1 4,508,748 - ABZR88_RS18480 0.36 -0.2
Or see this region's nucleotide sequence