Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS17030

Experiment: R2A 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS17020 and ABZR88_RS17025 are separated by 10 nucleotidesABZR88_RS17025 and ABZR88_RS17030 are separated by 124 nucleotidesABZR88_RS17030 and ABZR88_RS17035 are separated by 315 nucleotides ABZR88_RS17020: ABZR88_RS17020 - hypothetical protein, at 4,173,315 to 4,174,544 _RS17020 ABZR88_RS17025: ABZR88_RS17025 - thymidine kinase, at 4,174,555 to 4,175,136 _RS17025 ABZR88_RS17030: ABZR88_RS17030 - PleD family two-component system response regulator, at 4,175,261 to 4,175,641 _RS17030 ABZR88_RS17035: ABZR88_RS17035 - AraC family transcriptional regulator, at 4,175,957 to 4,176,826 _RS17035 Position (kb) 4175 4176Strain fitness (log2 ratio) -1 0 1at 4174.332 kb on - strand, within ABZR88_RS17020at 4174.333 kb on + strand, within ABZR88_RS17020at 4174.385 kb on + strand, within ABZR88_RS17020at 4174.440 kb on - strandat 4174.478 kb on + strandat 4174.608 kb on - strandat 4174.901 kb on + strand, within ABZR88_RS17025at 4174.910 kb on + strand, within ABZR88_RS17025at 4174.997 kb on + strand, within ABZR88_RS17025at 4174.998 kb on - strand, within ABZR88_RS17025at 4175.034 kb on - strand, within ABZR88_RS17025at 4175.036 kb on - strand, within ABZR88_RS17025at 4175.036 kb on - strand, within ABZR88_RS17025at 4175.214 kb on + strandat 4175.302 kb on - strand, within ABZR88_RS17030at 4175.417 kb on - strand, within ABZR88_RS17030at 4175.498 kb on - strand, within ABZR88_RS17030at 4175.700 kb on - strandat 4175.700 kb on - strandat 4175.700 kb on - strandat 4175.767 kb on - strandat 4175.827 kb on + strandat 4176.112 kb on + strand, within ABZR88_RS17035at 4176.277 kb on - strand, within ABZR88_RS17035at 4176.404 kb on - strand, within ABZR88_RS17035at 4176.470 kb on - strand, within ABZR88_RS17035at 4176.512 kb on - strand, within ABZR88_RS17035

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A 30C
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4,174,332 - ABZR88_RS17020 0.83 -0.8
4,174,333 + ABZR88_RS17020 0.83 -0.1
4,174,385 + ABZR88_RS17020 0.87 -0.5
4,174,440 - +0.1
4,174,478 + +1.2
4,174,608 - +0.2
4,174,901 + ABZR88_RS17025 0.59 +0.2
4,174,910 + ABZR88_RS17025 0.61 +0.3
4,174,997 + ABZR88_RS17025 0.76 +0.1
4,174,998 - ABZR88_RS17025 0.76 +0.2
4,175,034 - ABZR88_RS17025 0.82 +0.4
4,175,036 - ABZR88_RS17025 0.83 +0.1
4,175,036 - ABZR88_RS17025 0.83 +0.4
4,175,214 + -0.1
4,175,302 - ABZR88_RS17030 0.11 -0.0
4,175,417 - ABZR88_RS17030 0.41 +0.2
4,175,498 - ABZR88_RS17030 0.62 -0.1
4,175,700 - +0.1
4,175,700 - -0.2
4,175,700 - +0.1
4,175,767 - +0.6
4,175,827 + +0.2
4,176,112 + ABZR88_RS17035 0.18 +0.2
4,176,277 - ABZR88_RS17035 0.37 -0.3
4,176,404 - ABZR88_RS17035 0.51 +0.3
4,176,470 - ABZR88_RS17035 0.59 +0.0
4,176,512 - ABZR88_RS17035 0.64 +0.8

Or see this region's nucleotide sequence