Experiment: R2A 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS17020 and ABZR88_RS17025 are separated by 10 nucleotides ABZR88_RS17025 and ABZR88_RS17030 are separated by 124 nucleotides ABZR88_RS17030 and ABZR88_RS17035 are separated by 315 nucleotides
ABZR88_RS17020: ABZR88_RS17020 - hypothetical protein, at 4,173,315 to 4,174,544
_RS17020
ABZR88_RS17025: ABZR88_RS17025 - thymidine kinase, at 4,174,555 to 4,175,136
_RS17025
ABZR88_RS17030: ABZR88_RS17030 - PleD family two-component system response regulator, at 4,175,261 to 4,175,641
_RS17030
ABZR88_RS17035: ABZR88_RS17035 - AraC family transcriptional regulator, at 4,175,957 to 4,176,826
_RS17035
Position (kb)
4175
4176 Strain fitness (log2 ratio)
-1
0
1 at 4174.332 kb on - strand, within ABZR88_RS17020 at 4174.333 kb on + strand, within ABZR88_RS17020 at 4174.385 kb on + strand, within ABZR88_RS17020 at 4174.440 kb on - strand at 4174.478 kb on + strand at 4174.608 kb on - strand at 4174.901 kb on + strand, within ABZR88_RS17025 at 4174.910 kb on + strand, within ABZR88_RS17025 at 4174.997 kb on + strand, within ABZR88_RS17025 at 4174.998 kb on - strand, within ABZR88_RS17025 at 4175.034 kb on - strand, within ABZR88_RS17025 at 4175.036 kb on - strand, within ABZR88_RS17025 at 4175.036 kb on - strand, within ABZR88_RS17025 at 4175.214 kb on + strand at 4175.302 kb on - strand, within ABZR88_RS17030 at 4175.417 kb on - strand, within ABZR88_RS17030 at 4175.498 kb on - strand, within ABZR88_RS17030 at 4175.700 kb on - strand at 4175.700 kb on - strand at 4175.700 kb on - strand at 4175.767 kb on - strand at 4175.827 kb on + strand at 4176.112 kb on + strand, within ABZR88_RS17035 at 4176.277 kb on - strand, within ABZR88_RS17035 at 4176.404 kb on - strand, within ABZR88_RS17035 at 4176.470 kb on - strand, within ABZR88_RS17035 at 4176.512 kb on - strand, within ABZR88_RS17035
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 30C remove 4,174,332 - ABZR88_RS17020 0.83 -0.8 4,174,333 + ABZR88_RS17020 0.83 -0.1 4,174,385 + ABZR88_RS17020 0.87 -0.5 4,174,440 - +0.1 4,174,478 + +1.2 4,174,608 - +0.2 4,174,901 + ABZR88_RS17025 0.59 +0.2 4,174,910 + ABZR88_RS17025 0.61 +0.3 4,174,997 + ABZR88_RS17025 0.76 +0.1 4,174,998 - ABZR88_RS17025 0.76 +0.2 4,175,034 - ABZR88_RS17025 0.82 +0.4 4,175,036 - ABZR88_RS17025 0.83 +0.1 4,175,036 - ABZR88_RS17025 0.83 +0.4 4,175,214 + -0.1 4,175,302 - ABZR88_RS17030 0.11 -0.0 4,175,417 - ABZR88_RS17030 0.41 +0.2 4,175,498 - ABZR88_RS17030 0.62 -0.1 4,175,700 - +0.1 4,175,700 - -0.2 4,175,700 - +0.1 4,175,767 - +0.6 4,175,827 + +0.2 4,176,112 + ABZR88_RS17035 0.18 +0.2 4,176,277 - ABZR88_RS17035 0.37 -0.3 4,176,404 - ABZR88_RS17035 0.51 +0.3 4,176,470 - ABZR88_RS17035 0.59 +0.0 4,176,512 - ABZR88_RS17035 0.64 +0.8
Or see this region's nucleotide sequence