Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS14180

Experiment: R2A 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS14175 and ABZR88_RS14180 are separated by 17 nucleotidesABZR88_RS14180 and ABZR88_RS14185 are separated by 54 nucleotides ABZR88_RS14175: ABZR88_RS14175 - TonB-dependent receptor, at 3,519,142 to 3,522,150 _RS14175 ABZR88_RS14180: ABZR88_RS14180 - RagB/SusD family nutrient uptake outer membrane protein, at 3,522,168 to 3,523,802 _RS14180 ABZR88_RS14185: ABZR88_RS14185 - PAS domain S-box protein, at 3,523,857 to 3,526,511 _RS14185 Position (kb) 3522 3523 3524Strain fitness (log2 ratio) -1 0 1at 3521.191 kb on + strand, within ABZR88_RS14175at 3521.252 kb on - strand, within ABZR88_RS14175at 3521.273 kb on + strand, within ABZR88_RS14175at 3521.276 kb on + strand, within ABZR88_RS14175at 3521.427 kb on + strand, within ABZR88_RS14175at 3521.536 kb on + strand, within ABZR88_RS14175at 3521.560 kb on + strand, within ABZR88_RS14175at 3521.625 kb on + strand, within ABZR88_RS14175at 3521.680 kb on - strand, within ABZR88_RS14175at 3521.761 kb on - strand, within ABZR88_RS14175at 3521.832 kb on + strand, within ABZR88_RS14175at 3521.896 kb on - strandat 3521.918 kb on - strandat 3521.918 kb on - strandat 3521.920 kb on + strandat 3521.921 kb on - strandat 3521.985 kb on + strandat 3522.082 kb on - strandat 3522.413 kb on - strand, within ABZR88_RS14180at 3522.443 kb on + strand, within ABZR88_RS14180at 3522.537 kb on - strand, within ABZR88_RS14180at 3522.555 kb on - strand, within ABZR88_RS14180at 3522.747 kb on + strand, within ABZR88_RS14180at 3522.860 kb on + strand, within ABZR88_RS14180at 3522.881 kb on + strand, within ABZR88_RS14180at 3522.887 kb on + strand, within ABZR88_RS14180at 3522.911 kb on - strand, within ABZR88_RS14180at 3523.123 kb on - strand, within ABZR88_RS14180at 3523.208 kb on + strand, within ABZR88_RS14180at 3523.213 kb on - strand, within ABZR88_RS14180at 3523.524 kb on - strand, within ABZR88_RS14180at 3523.645 kb on + strandat 3523.646 kb on - strandat 3523.646 kb on - strandat 3523.748 kb on + strandat 3523.749 kb on - strandat 3523.792 kb on - strandat 3524.150 kb on + strand, within ABZR88_RS14185at 3524.189 kb on - strand, within ABZR88_RS14185at 3524.337 kb on - strand, within ABZR88_RS14185at 3524.358 kb on - strand, within ABZR88_RS14185at 3524.550 kb on - strand, within ABZR88_RS14185at 3524.631 kb on - strand, within ABZR88_RS14185

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A 30C
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3,521,191 + ABZR88_RS14175 0.68 -0.1
3,521,252 - ABZR88_RS14175 0.70 -0.1
3,521,273 + ABZR88_RS14175 0.71 -1.5
3,521,276 + ABZR88_RS14175 0.71 +0.1
3,521,427 + ABZR88_RS14175 0.76 -0.3
3,521,536 + ABZR88_RS14175 0.80 -0.2
3,521,560 + ABZR88_RS14175 0.80 -0.1
3,521,625 + ABZR88_RS14175 0.83 +0.1
3,521,680 - ABZR88_RS14175 0.84 -0.1
3,521,761 - ABZR88_RS14175 0.87 -0.3
3,521,832 + ABZR88_RS14175 0.89 -0.2
3,521,896 - -0.1
3,521,918 - +0.7
3,521,918 - +0.3
3,521,920 + -0.1
3,521,921 - +0.1
3,521,985 + -0.1
3,522,082 - -0.3
3,522,413 - ABZR88_RS14180 0.15 +0.0
3,522,443 + ABZR88_RS14180 0.17 -1.0
3,522,537 - ABZR88_RS14180 0.23 -0.1
3,522,555 - ABZR88_RS14180 0.24 -0.1
3,522,747 + ABZR88_RS14180 0.35 -0.4
3,522,860 + ABZR88_RS14180 0.42 -0.9
3,522,881 + ABZR88_RS14180 0.44 -0.4
3,522,887 + ABZR88_RS14180 0.44 -0.0
3,522,911 - ABZR88_RS14180 0.45 +0.1
3,523,123 - ABZR88_RS14180 0.58 +0.2
3,523,208 + ABZR88_RS14180 0.64 -0.3
3,523,213 - ABZR88_RS14180 0.64 -0.1
3,523,524 - ABZR88_RS14180 0.83 -0.5
3,523,645 + -0.2
3,523,646 - -0.2
3,523,646 - -0.0
3,523,748 + -0.4
3,523,749 - -0.0
3,523,792 - -0.1
3,524,150 + ABZR88_RS14185 0.11 +0.0
3,524,189 - ABZR88_RS14185 0.13 -0.1
3,524,337 - ABZR88_RS14185 0.18 -0.5
3,524,358 - ABZR88_RS14185 0.19 +0.5
3,524,550 - ABZR88_RS14185 0.26 +0.0
3,524,631 - ABZR88_RS14185 0.29 +0.3

Or see this region's nucleotide sequence