Experiment: R2A 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS14175 and ABZR88_RS14180 are separated by 17 nucleotides ABZR88_RS14180 and ABZR88_RS14185 are separated by 54 nucleotides
ABZR88_RS14175: ABZR88_RS14175 - TonB-dependent receptor, at 3,519,142 to 3,522,150
_RS14175
ABZR88_RS14180: ABZR88_RS14180 - RagB/SusD family nutrient uptake outer membrane protein, at 3,522,168 to 3,523,802
_RS14180
ABZR88_RS14185: ABZR88_RS14185 - PAS domain S-box protein, at 3,523,857 to 3,526,511
_RS14185
Position (kb)
3522
3523
3524 Strain fitness (log2 ratio)
-1
0
1 at 3521.191 kb on + strand, within ABZR88_RS14175 at 3521.252 kb on - strand, within ABZR88_RS14175 at 3521.273 kb on + strand, within ABZR88_RS14175 at 3521.276 kb on + strand, within ABZR88_RS14175 at 3521.427 kb on + strand, within ABZR88_RS14175 at 3521.536 kb on + strand, within ABZR88_RS14175 at 3521.560 kb on + strand, within ABZR88_RS14175 at 3521.625 kb on + strand, within ABZR88_RS14175 at 3521.680 kb on - strand, within ABZR88_RS14175 at 3521.761 kb on - strand, within ABZR88_RS14175 at 3521.832 kb on + strand, within ABZR88_RS14175 at 3521.896 kb on - strand at 3521.918 kb on - strand at 3521.918 kb on - strand at 3521.920 kb on + strand at 3521.921 kb on - strand at 3521.985 kb on + strand at 3522.082 kb on - strand at 3522.413 kb on - strand, within ABZR88_RS14180 at 3522.443 kb on + strand, within ABZR88_RS14180 at 3522.537 kb on - strand, within ABZR88_RS14180 at 3522.555 kb on - strand, within ABZR88_RS14180 at 3522.747 kb on + strand, within ABZR88_RS14180 at 3522.860 kb on + strand, within ABZR88_RS14180 at 3522.881 kb on + strand, within ABZR88_RS14180 at 3522.887 kb on + strand, within ABZR88_RS14180 at 3522.911 kb on - strand, within ABZR88_RS14180 at 3523.123 kb on - strand, within ABZR88_RS14180 at 3523.208 kb on + strand, within ABZR88_RS14180 at 3523.213 kb on - strand, within ABZR88_RS14180 at 3523.524 kb on - strand, within ABZR88_RS14180 at 3523.645 kb on + strand at 3523.646 kb on - strand at 3523.646 kb on - strand at 3523.748 kb on + strand at 3523.749 kb on - strand at 3523.792 kb on - strand at 3524.150 kb on + strand, within ABZR88_RS14185 at 3524.189 kb on - strand, within ABZR88_RS14185 at 3524.337 kb on - strand, within ABZR88_RS14185 at 3524.358 kb on - strand, within ABZR88_RS14185 at 3524.550 kb on - strand, within ABZR88_RS14185 at 3524.631 kb on - strand, within ABZR88_RS14185
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 30C remove 3,521,191 + ABZR88_RS14175 0.68 -0.1 3,521,252 - ABZR88_RS14175 0.70 -0.1 3,521,273 + ABZR88_RS14175 0.71 -1.5 3,521,276 + ABZR88_RS14175 0.71 +0.1 3,521,427 + ABZR88_RS14175 0.76 -0.3 3,521,536 + ABZR88_RS14175 0.80 -0.2 3,521,560 + ABZR88_RS14175 0.80 -0.1 3,521,625 + ABZR88_RS14175 0.83 +0.1 3,521,680 - ABZR88_RS14175 0.84 -0.1 3,521,761 - ABZR88_RS14175 0.87 -0.3 3,521,832 + ABZR88_RS14175 0.89 -0.2 3,521,896 - -0.1 3,521,918 - +0.7 3,521,918 - +0.3 3,521,920 + -0.1 3,521,921 - +0.1 3,521,985 + -0.1 3,522,082 - -0.3 3,522,413 - ABZR88_RS14180 0.15 +0.0 3,522,443 + ABZR88_RS14180 0.17 -1.0 3,522,537 - ABZR88_RS14180 0.23 -0.1 3,522,555 - ABZR88_RS14180 0.24 -0.1 3,522,747 + ABZR88_RS14180 0.35 -0.4 3,522,860 + ABZR88_RS14180 0.42 -0.9 3,522,881 + ABZR88_RS14180 0.44 -0.4 3,522,887 + ABZR88_RS14180 0.44 -0.0 3,522,911 - ABZR88_RS14180 0.45 +0.1 3,523,123 - ABZR88_RS14180 0.58 +0.2 3,523,208 + ABZR88_RS14180 0.64 -0.3 3,523,213 - ABZR88_RS14180 0.64 -0.1 3,523,524 - ABZR88_RS14180 0.83 -0.5 3,523,645 + -0.2 3,523,646 - -0.2 3,523,646 - -0.0 3,523,748 + -0.4 3,523,749 - -0.0 3,523,792 - -0.1 3,524,150 + ABZR88_RS14185 0.11 +0.0 3,524,189 - ABZR88_RS14185 0.13 -0.1 3,524,337 - ABZR88_RS14185 0.18 -0.5 3,524,358 - ABZR88_RS14185 0.19 +0.5 3,524,550 - ABZR88_RS14185 0.26 +0.0 3,524,631 - ABZR88_RS14185 0.29 +0.3
Or see this region's nucleotide sequence