Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS13830

Experiment: R2A 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS13825 and ABZR88_RS13830 are separated by 404 nucleotidesABZR88_RS13830 and ABZR88_RS13835 are separated by 129 nucleotidesABZR88_RS13835 and ABZR88_RS13840 overlap by 4 nucleotides ABZR88_RS13825: ABZR88_RS13825 - hypothetical protein, at 3,450,604 to 3,451,224 _RS13825 ABZR88_RS13830: ABZR88_RS13830 - ABC transporter ATP-binding protein, at 3,451,629 to 3,452,351 _RS13830 ABZR88_RS13835: ABZR88_RS13835 - Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC, at 3,452,481 to 3,452,768 _RS13835 ABZR88_RS13840: ABZR88_RS13840 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 3,452,765 to 3,453,499 _RS13840 Position (kb) 3451 3452 3453Strain fitness (log2 ratio) -2 -1 0 1at 3450.639 kb on - strandat 3450.652 kb on + strandat 3450.683 kb on - strand, within ABZR88_RS13825at 3450.775 kb on + strand, within ABZR88_RS13825at 3450.897 kb on - strand, within ABZR88_RS13825at 3450.960 kb on - strand, within ABZR88_RS13825at 3451.169 kb on - strandat 3451.385 kb on - strandat 3451.519 kb on - strandat 3451.519 kb on - strandat 3451.562 kb on - strandat 3451.585 kb on - strandat 3451.604 kb on - strandat 3451.631 kb on - strandat 3451.769 kb on + strand, within ABZR88_RS13830at 3451.872 kb on - strand, within ABZR88_RS13830at 3452.304 kb on + strandat 3452.311 kb on + strandat 3452.392 kb on - strandat 3452.769 kb on - strandat 3453.279 kb on + strand, within ABZR88_RS13840

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A 30C
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3,450,639 - -0.1
3,450,652 + +0.2
3,450,683 - ABZR88_RS13825 0.13 +1.7
3,450,775 + ABZR88_RS13825 0.28 +0.0
3,450,897 - ABZR88_RS13825 0.47 -0.4
3,450,960 - ABZR88_RS13825 0.57 +0.2
3,451,169 - -0.4
3,451,385 - +0.0
3,451,519 - -0.4
3,451,519 - +0.3
3,451,562 - -2.3
3,451,585 - +0.4
3,451,604 - +0.3
3,451,631 - -0.3
3,451,769 + ABZR88_RS13830 0.19 +0.0
3,451,872 - ABZR88_RS13830 0.34 +0.0
3,452,304 + -0.3
3,452,311 + +0.2
3,452,392 - -0.2
3,452,769 - +0.1
3,453,279 + ABZR88_RS13840 0.70 -0.3

Or see this region's nucleotide sequence