Experiment: R2A 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS13825 and ABZR88_RS13830 are separated by 404 nucleotides ABZR88_RS13830 and ABZR88_RS13835 are separated by 129 nucleotides ABZR88_RS13835 and ABZR88_RS13840 overlap by 4 nucleotides
ABZR88_RS13825: ABZR88_RS13825 - hypothetical protein, at 3,450,604 to 3,451,224
_RS13825
ABZR88_RS13830: ABZR88_RS13830 - ABC transporter ATP-binding protein, at 3,451,629 to 3,452,351
_RS13830
ABZR88_RS13835: ABZR88_RS13835 - Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC, at 3,452,481 to 3,452,768
_RS13835
ABZR88_RS13840: ABZR88_RS13840 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 3,452,765 to 3,453,499
_RS13840
Position (kb)
3451
3452
3453 Strain fitness (log2 ratio)
-2
-1
0
1 at 3450.639 kb on - strand at 3450.652 kb on + strand at 3450.683 kb on - strand, within ABZR88_RS13825 at 3450.775 kb on + strand, within ABZR88_RS13825 at 3450.897 kb on - strand, within ABZR88_RS13825 at 3450.960 kb on - strand, within ABZR88_RS13825 at 3451.169 kb on - strand at 3451.385 kb on - strand at 3451.519 kb on - strand at 3451.519 kb on - strand at 3451.562 kb on - strand at 3451.585 kb on - strand at 3451.604 kb on - strand at 3451.631 kb on - strand at 3451.769 kb on + strand, within ABZR88_RS13830 at 3451.872 kb on - strand, within ABZR88_RS13830 at 3452.304 kb on + strand at 3452.311 kb on + strand at 3452.392 kb on - strand at 3452.769 kb on - strand at 3453.279 kb on + strand, within ABZR88_RS13840
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 30C remove 3,450,639 - -0.1 3,450,652 + +0.2 3,450,683 - ABZR88_RS13825 0.13 +1.7 3,450,775 + ABZR88_RS13825 0.28 +0.0 3,450,897 - ABZR88_RS13825 0.47 -0.4 3,450,960 - ABZR88_RS13825 0.57 +0.2 3,451,169 - -0.4 3,451,385 - +0.0 3,451,519 - -0.4 3,451,519 - +0.3 3,451,562 - -2.3 3,451,585 - +0.4 3,451,604 - +0.3 3,451,631 - -0.3 3,451,769 + ABZR88_RS13830 0.19 +0.0 3,451,872 - ABZR88_RS13830 0.34 +0.0 3,452,304 + -0.3 3,452,311 + +0.2 3,452,392 - -0.2 3,452,769 - +0.1 3,453,279 + ABZR88_RS13840 0.70 -0.3
Or see this region's nucleotide sequence