Experiment: R2A 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS10905 and ABZR88_RS10910 are separated by 381 nucleotides ABZR88_RS10910 and ABZR88_RS10915 are separated by 164 nucleotides ABZR88_RS10915 and ABZR88_RS10920 are separated by 5 nucleotides ABZR88_RS10920 and ABZR88_RS10925 overlap by 4 nucleotides
ABZR88_RS10905: ABZR88_RS10905 - hypothetical protein, at 2,656,692 to 2,656,919
_RS10905
ABZR88_RS10910: ABZR88_RS10910 - hypothetical protein, at 2,657,301 to 2,657,441
_RS10910
ABZR88_RS10915: ABZR88_RS10915 - hypothetical protein, at 2,657,606 to 2,657,815
_RS10915
ABZR88_RS10920: ABZR88_RS10920 - metallophosphoesterase, at 2,657,821 to 2,659,629
_RS10920
ABZR88_RS10925: ABZR88_RS10925 - hypothetical protein, at 2,659,626 to 2,660,645
_RS10925
Position (kb)
2657
2658
2659
2660 Strain fitness (log2 ratio)
-1
0
1 at 2656.925 kb on + strand at 2656.926 kb on - strand at 2656.933 kb on - strand at 2656.957 kb on + strand at 2657.100 kb on - strand at 2657.230 kb on + strand at 2657.230 kb on + strand at 2657.289 kb on - strand at 2657.322 kb on - strand, within ABZR88_RS10910 at 2657.643 kb on + strand, within ABZR88_RS10915 at 2657.840 kb on + strand at 2657.942 kb on + strand at 2658.025 kb on - strand, within ABZR88_RS10920 at 2658.108 kb on + strand, within ABZR88_RS10920 at 2658.236 kb on + strand, within ABZR88_RS10920 at 2658.236 kb on + strand, within ABZR88_RS10920 at 2658.247 kb on - strand, within ABZR88_RS10920 at 2658.742 kb on - strand, within ABZR88_RS10920 at 2658.790 kb on - strand, within ABZR88_RS10920 at 2658.841 kb on + strand, within ABZR88_RS10920 at 2658.916 kb on + strand, within ABZR88_RS10920 at 2659.045 kb on + strand, within ABZR88_RS10920 at 2659.244 kb on - strand, within ABZR88_RS10920 at 2659.281 kb on - strand, within ABZR88_RS10920 at 2659.610 kb on - strand at 2659.612 kb on - strand at 2659.629 kb on + strand at 2659.784 kb on - strand, within ABZR88_RS10925 at 2659.842 kb on + strand, within ABZR88_RS10925 at 2659.954 kb on - strand, within ABZR88_RS10925 at 2659.954 kb on - strand, within ABZR88_RS10925 at 2660.167 kb on + strand, within ABZR88_RS10925 at 2660.175 kb on - strand, within ABZR88_RS10925 at 2660.272 kb on + strand, within ABZR88_RS10925 at 2660.487 kb on - strand, within ABZR88_RS10925 at 2660.608 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 30C remove 2,656,925 + -0.5 2,656,926 - +0.0 2,656,933 - +0.5 2,656,957 + -0.0 2,657,100 - -0.7 2,657,230 + -0.7 2,657,230 + -0.0 2,657,289 - -0.2 2,657,322 - ABZR88_RS10910 0.15 +0.0 2,657,643 + ABZR88_RS10915 0.18 +0.7 2,657,840 + +0.0 2,657,942 + +0.1 2,658,025 - ABZR88_RS10920 0.11 -0.2 2,658,108 + ABZR88_RS10920 0.16 -0.1 2,658,236 + ABZR88_RS10920 0.23 +0.2 2,658,236 + ABZR88_RS10920 0.23 -0.0 2,658,247 - ABZR88_RS10920 0.24 -0.6 2,658,742 - ABZR88_RS10920 0.51 +0.3 2,658,790 - ABZR88_RS10920 0.54 -0.0 2,658,841 + ABZR88_RS10920 0.56 +0.0 2,658,916 + ABZR88_RS10920 0.61 +0.2 2,659,045 + ABZR88_RS10920 0.68 -0.3 2,659,244 - ABZR88_RS10920 0.79 +1.0 2,659,281 - ABZR88_RS10920 0.81 +0.4 2,659,610 - -0.0 2,659,612 - -0.1 2,659,629 + -0.2 2,659,784 - ABZR88_RS10925 0.15 -0.2 2,659,842 + ABZR88_RS10925 0.21 -0.0 2,659,954 - ABZR88_RS10925 0.32 +0.1 2,659,954 - ABZR88_RS10925 0.32 -0.0 2,660,167 + ABZR88_RS10925 0.53 -0.0 2,660,175 - ABZR88_RS10925 0.54 +0.0 2,660,272 + ABZR88_RS10925 0.63 +0.1 2,660,487 - ABZR88_RS10925 0.84 -1.1 2,660,608 + +0.0
Or see this region's nucleotide sequence