Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS06305

Experiment: R2A 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS06300 and ABZR88_RS06305 are separated by 11 nucleotidesABZR88_RS06305 and ABZR88_RS06310 are separated by 115 nucleotidesABZR88_RS06310 and ABZR88_RS06315 are separated by 345 nucleotides ABZR88_RS06300: ABZR88_RS06300 - polysaccharide deacetylase family protein, at 1,564,770 to 1,565,612 _RS06300 ABZR88_RS06305: ABZR88_RS06305 - hypothetical protein, at 1,565,624 to 1,565,989 _RS06305 ABZR88_RS06310: ABZR88_RS06310 - cold-shock protein, at 1,566,105 to 1,566,299 _RS06310 ABZR88_RS06315: ABZR88_RS06315 - YtxH domain-containing protein, at 1,566,645 to 1,567,043 _RS06315 Position (kb) 1565 1566Strain fitness (log2 ratio) -1 0 1at 1564.738 kb on - strandat 1564.746 kb on + strandat 1564.871 kb on - strand, within ABZR88_RS06300at 1564.878 kb on + strand, within ABZR88_RS06300at 1564.947 kb on - strand, within ABZR88_RS06300at 1564.954 kb on - strand, within ABZR88_RS06300at 1565.112 kb on + strand, within ABZR88_RS06300at 1565.141 kb on + strand, within ABZR88_RS06300at 1565.369 kb on + strand, within ABZR88_RS06300at 1565.411 kb on + strand, within ABZR88_RS06300at 1565.411 kb on + strand, within ABZR88_RS06300at 1565.444 kb on + strand, within ABZR88_RS06300at 1565.450 kb on - strand, within ABZR88_RS06300at 1565.482 kb on - strand, within ABZR88_RS06300at 1565.550 kb on + strandat 1565.588 kb on - strandat 1565.603 kb on + strandat 1565.682 kb on + strand, within ABZR88_RS06305at 1565.687 kb on + strand, within ABZR88_RS06305at 1565.687 kb on + strand, within ABZR88_RS06305at 1565.690 kb on - strand, within ABZR88_RS06305at 1565.699 kb on + strand, within ABZR88_RS06305at 1565.702 kb on + strand, within ABZR88_RS06305at 1565.783 kb on - strand, within ABZR88_RS06305at 1566.054 kb on + strandat 1566.062 kb on - strandat 1566.158 kb on + strand, within ABZR88_RS06310at 1566.301 kb on - strandat 1566.303 kb on - strandat 1566.305 kb on - strandat 1566.362 kb on - strandat 1566.366 kb on - strandat 1566.636 kb on + strandat 1566.752 kb on + strand, within ABZR88_RS06315at 1566.753 kb on - strand, within ABZR88_RS06315at 1566.754 kb on + strand, within ABZR88_RS06315at 1566.755 kb on - strand, within ABZR88_RS06315at 1566.763 kb on - strand, within ABZR88_RS06315at 1566.766 kb on + strand, within ABZR88_RS06315at 1566.767 kb on - strand, within ABZR88_RS06315at 1566.842 kb on - strand, within ABZR88_RS06315at 1566.870 kb on - strand, within ABZR88_RS06315

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A 30C
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1,564,738 - -0.2
1,564,746 + -0.1
1,564,871 - ABZR88_RS06300 0.12 +0.3
1,564,878 + ABZR88_RS06300 0.13 +0.2
1,564,947 - ABZR88_RS06300 0.21 +0.0
1,564,954 - ABZR88_RS06300 0.22 +0.3
1,565,112 + ABZR88_RS06300 0.41 +0.1
1,565,141 + ABZR88_RS06300 0.44 +0.6
1,565,369 + ABZR88_RS06300 0.71 -0.4
1,565,411 + ABZR88_RS06300 0.76 +0.3
1,565,411 + ABZR88_RS06300 0.76 -0.4
1,565,444 + ABZR88_RS06300 0.80 +0.0
1,565,450 - ABZR88_RS06300 0.81 +0.3
1,565,482 - ABZR88_RS06300 0.84 +0.2
1,565,550 + -0.1
1,565,588 - -0.1
1,565,603 + -0.1
1,565,682 + ABZR88_RS06305 0.16 -0.2
1,565,687 + ABZR88_RS06305 0.17 +0.4
1,565,687 + ABZR88_RS06305 0.17 -0.1
1,565,690 - ABZR88_RS06305 0.18 -0.3
1,565,699 + ABZR88_RS06305 0.20 -1.7
1,565,702 + ABZR88_RS06305 0.21 +0.6
1,565,783 - ABZR88_RS06305 0.43 +0.6
1,566,054 + -0.1
1,566,062 - +0.1
1,566,158 + ABZR88_RS06310 0.27 +0.2
1,566,301 - +0.2
1,566,303 - -0.4
1,566,305 - +0.3
1,566,362 - -0.2
1,566,366 - -0.2
1,566,636 + +0.2
1,566,752 + ABZR88_RS06315 0.27 -0.1
1,566,753 - ABZR88_RS06315 0.27 -1.1
1,566,754 + ABZR88_RS06315 0.27 -0.1
1,566,755 - ABZR88_RS06315 0.28 +0.2
1,566,763 - ABZR88_RS06315 0.30 +1.3
1,566,766 + ABZR88_RS06315 0.30 -0.2
1,566,767 - ABZR88_RS06315 0.31 +0.4
1,566,842 - ABZR88_RS06315 0.49 -0.1
1,566,870 - ABZR88_RS06315 0.56 +0.3

Or see this region's nucleotide sequence