Experiment: R2A 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS06300 and ABZR88_RS06305 are separated by 11 nucleotides ABZR88_RS06305 and ABZR88_RS06310 are separated by 115 nucleotides ABZR88_RS06310 and ABZR88_RS06315 are separated by 345 nucleotides
ABZR88_RS06300: ABZR88_RS06300 - polysaccharide deacetylase family protein, at 1,564,770 to 1,565,612
_RS06300
ABZR88_RS06305: ABZR88_RS06305 - hypothetical protein, at 1,565,624 to 1,565,989
_RS06305
ABZR88_RS06310: ABZR88_RS06310 - cold-shock protein, at 1,566,105 to 1,566,299
_RS06310
ABZR88_RS06315: ABZR88_RS06315 - YtxH domain-containing protein, at 1,566,645 to 1,567,043
_RS06315
Position (kb)
1565
1566 Strain fitness (log2 ratio)
-1
0
1 at 1564.738 kb on - strand at 1564.746 kb on + strand at 1564.871 kb on - strand, within ABZR88_RS06300 at 1564.878 kb on + strand, within ABZR88_RS06300 at 1564.947 kb on - strand, within ABZR88_RS06300 at 1564.954 kb on - strand, within ABZR88_RS06300 at 1565.112 kb on + strand, within ABZR88_RS06300 at 1565.141 kb on + strand, within ABZR88_RS06300 at 1565.369 kb on + strand, within ABZR88_RS06300 at 1565.411 kb on + strand, within ABZR88_RS06300 at 1565.411 kb on + strand, within ABZR88_RS06300 at 1565.444 kb on + strand, within ABZR88_RS06300 at 1565.450 kb on - strand, within ABZR88_RS06300 at 1565.482 kb on - strand, within ABZR88_RS06300 at 1565.550 kb on + strand at 1565.588 kb on - strand at 1565.603 kb on + strand at 1565.682 kb on + strand, within ABZR88_RS06305 at 1565.687 kb on + strand, within ABZR88_RS06305 at 1565.687 kb on + strand, within ABZR88_RS06305 at 1565.690 kb on - strand, within ABZR88_RS06305 at 1565.699 kb on + strand, within ABZR88_RS06305 at 1565.702 kb on + strand, within ABZR88_RS06305 at 1565.783 kb on - strand, within ABZR88_RS06305 at 1566.054 kb on + strand at 1566.062 kb on - strand at 1566.158 kb on + strand, within ABZR88_RS06310 at 1566.301 kb on - strand at 1566.303 kb on - strand at 1566.305 kb on - strand at 1566.362 kb on - strand at 1566.366 kb on - strand at 1566.636 kb on + strand at 1566.752 kb on + strand, within ABZR88_RS06315 at 1566.753 kb on - strand, within ABZR88_RS06315 at 1566.754 kb on + strand, within ABZR88_RS06315 at 1566.755 kb on - strand, within ABZR88_RS06315 at 1566.763 kb on - strand, within ABZR88_RS06315 at 1566.766 kb on + strand, within ABZR88_RS06315 at 1566.767 kb on - strand, within ABZR88_RS06315 at 1566.842 kb on - strand, within ABZR88_RS06315 at 1566.870 kb on - strand, within ABZR88_RS06315
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 30C remove 1,564,738 - -0.2 1,564,746 + -0.1 1,564,871 - ABZR88_RS06300 0.12 +0.3 1,564,878 + ABZR88_RS06300 0.13 +0.2 1,564,947 - ABZR88_RS06300 0.21 +0.0 1,564,954 - ABZR88_RS06300 0.22 +0.3 1,565,112 + ABZR88_RS06300 0.41 +0.1 1,565,141 + ABZR88_RS06300 0.44 +0.6 1,565,369 + ABZR88_RS06300 0.71 -0.4 1,565,411 + ABZR88_RS06300 0.76 +0.3 1,565,411 + ABZR88_RS06300 0.76 -0.4 1,565,444 + ABZR88_RS06300 0.80 +0.0 1,565,450 - ABZR88_RS06300 0.81 +0.3 1,565,482 - ABZR88_RS06300 0.84 +0.2 1,565,550 + -0.1 1,565,588 - -0.1 1,565,603 + -0.1 1,565,682 + ABZR88_RS06305 0.16 -0.2 1,565,687 + ABZR88_RS06305 0.17 +0.4 1,565,687 + ABZR88_RS06305 0.17 -0.1 1,565,690 - ABZR88_RS06305 0.18 -0.3 1,565,699 + ABZR88_RS06305 0.20 -1.7 1,565,702 + ABZR88_RS06305 0.21 +0.6 1,565,783 - ABZR88_RS06305 0.43 +0.6 1,566,054 + -0.1 1,566,062 - +0.1 1,566,158 + ABZR88_RS06310 0.27 +0.2 1,566,301 - +0.2 1,566,303 - -0.4 1,566,305 - +0.3 1,566,362 - -0.2 1,566,366 - -0.2 1,566,636 + +0.2 1,566,752 + ABZR88_RS06315 0.27 -0.1 1,566,753 - ABZR88_RS06315 0.27 -1.1 1,566,754 + ABZR88_RS06315 0.27 -0.1 1,566,755 - ABZR88_RS06315 0.28 +0.2 1,566,763 - ABZR88_RS06315 0.30 +1.3 1,566,766 + ABZR88_RS06315 0.30 -0.2 1,566,767 - ABZR88_RS06315 0.31 +0.4 1,566,842 - ABZR88_RS06315 0.49 -0.1 1,566,870 - ABZR88_RS06315 0.56 +0.3
Or see this region's nucleotide sequence