Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06280

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06279 and MPMX19_06280 are separated by 261 nucleotidesMPMX19_06280 and MPMX19_06281 are separated by 13 nucleotides MPMX19_06279: MPMX19_06279 - L-threonine kinase, at 27,690 to 28,655 _06279 MPMX19_06280: MPMX19_06280 - Leucine-responsive regulatory protein, at 28,917 to 29,390 _06280 MPMX19_06281: MPMX19_06281 - hypothetical protein, at 29,404 to 29,859 _06281 Position (kb) 28 29 30Strain fitness (log2 ratio) -2 -1 0 1 2 3at 28.039 kb on + strand, within MPMX19_06279at 28.039 kb on + strand, within MPMX19_06279at 28.040 kb on - strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.480 kb on - strand, within MPMX19_06279at 28.480 kb on - strand, within MPMX19_06279at 28.480 kb on - strand, within MPMX19_06279at 28.480 kb on - strand, within MPMX19_06279at 28.480 kb on - strand, within MPMX19_06279at 28.480 kb on - strand, within MPMX19_06279at 28.480 kb on - strand, within MPMX19_06279at 28.480 kb on - strand, within MPMX19_06279at 28.570 kb on - strandat 28.570 kb on - strandat 28.570 kb on - strandat 28.570 kb on - strandat 28.687 kb on + strandat 28.700 kb on + strandat 28.701 kb on - strandat 28.732 kb on + strandat 28.732 kb on + strandat 28.732 kb on + strandat 28.732 kb on + strandat 28.732 kb on + strandat 28.732 kb on + strandat 28.736 kb on + strandat 28.737 kb on - strandat 28.737 kb on - strandat 28.737 kb on - strandat 28.795 kb on + strandat 28.813 kb on - strandat 29.217 kb on + strand, within MPMX19_06280at 29.217 kb on + strand, within MPMX19_06280at 29.217 kb on + strand, within MPMX19_06280at 29.217 kb on + strand, within MPMX19_06280at 29.218 kb on - strand, within MPMX19_06280at 29.218 kb on - strand, within MPMX19_06280at 29.218 kb on - strand, within MPMX19_06280at 29.218 kb on - strand, within MPMX19_06280at 29.218 kb on - strand, within MPMX19_06280at 29.241 kb on + strand, within MPMX19_06280at 29.241 kb on + strand, within MPMX19_06280at 29.241 kb on + strand, within MPMX19_06280at 29.241 kb on + strand, within MPMX19_06280at 29.241 kb on + strand, within MPMX19_06280at 29.241 kb on + strand, within MPMX19_06280at 29.242 kb on - strand, within MPMX19_06280at 29.242 kb on - strand, within MPMX19_06280at 29.242 kb on - strand, within MPMX19_06280at 29.242 kb on - strand, within MPMX19_06280at 29.242 kb on - strand, within MPMX19_06280at 29.242 kb on - strand, within MPMX19_06280at 29.242 kb on - strand, within MPMX19_06280at 29.242 kb on - strand, within MPMX19_06280at 29.242 kb on - strand, within MPMX19_06280at 29.242 kb on - strand, within MPMX19_06280at 29.304 kb on + strand, within MPMX19_06280at 29.304 kb on + strand, within MPMX19_06280at 29.304 kb on + strand, within MPMX19_06280at 29.304 kb on + strand, within MPMX19_06280at 29.304 kb on + strand, within MPMX19_06280at 29.305 kb on - strand, within MPMX19_06280at 29.411 kb on + strandat 29.411 kb on + strandat 29.411 kb on + strandat 29.411 kb on + strandat 29.411 kb on + strandat 29.412 kb on - strandat 29.412 kb on - strandat 29.412 kb on - strandat 29.462 kb on + strand, within MPMX19_06281at 29.462 kb on + strand, within MPMX19_06281at 29.462 kb on + strand, within MPMX19_06281at 29.463 kb on - strand, within MPMX19_06281at 29.463 kb on - strand, within MPMX19_06281at 29.463 kb on - strand, within MPMX19_06281at 29.638 kb on + strand, within MPMX19_06281at 29.800 kb on + strand, within MPMX19_06281at 29.801 kb on - strand, within MPMX19_06281at 29.801 kb on - strand, within MPMX19_06281at 29.801 kb on - strand, within MPMX19_06281at 29.890 kb on + strandat 29.890 kb on + strandat 29.891 kb on - strandat 29.891 kb on - strandat 30.000 kb on + strandat 30.000 kb on + strandat 30.000 kb on + strandat 30.000 kb on + strandat 30.213 kb on + strandat 30.213 kb on + strandat 30.214 kb on - strandat 30.214 kb on - strandat 30.244 kb on + strandat 30.244 kb on + strandat 30.285 kb on + strandat 30.285 kb on + strandat 30.285 kb on + strandat 30.286 kb on - strandat 30.286 kb on - strandat 30.286 kb on - strandat 30.286 kb on - strandat 30.292 kb on + strandat 30.292 kb on + strandat 30.292 kb on + strandat 30.293 kb on - strandat 30.293 kb on - strandat 30.305 kb on + strandat 30.305 kb on + strandat 30.306 kb on - strandat 30.307 kb on + strandat 30.307 kb on + strandat 30.307 kb on + strandat 30.307 kb on + strandat 30.307 kb on + strandat 30.307 kb on + strandat 30.308 kb on - strandat 30.308 kb on - strandat 30.308 kb on - strandat 30.308 kb on - strandat 30.308 kb on - strandat 30.313 kb on + strandat 30.314 kb on - strandat 30.339 kb on - strandat 30.339 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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28,039 + MPMX19_06279 0.36 -0.7
28,039 + MPMX19_06279 0.36 +0.8
28,040 - MPMX19_06279 0.36 +0.7
28,479 + MPMX19_06279 0.82 -1.2
28,479 + MPMX19_06279 0.82 -1.2
28,479 + MPMX19_06279 0.82 +1.1
28,479 + MPMX19_06279 0.82 -0.4
28,479 + MPMX19_06279 0.82 -0.2
28,479 + MPMX19_06279 0.82 -0.5
28,479 + MPMX19_06279 0.82 -0.4
28,479 + MPMX19_06279 0.82 +0.7
28,479 + MPMX19_06279 0.82 -0.2
28,479 + MPMX19_06279 0.82 +3.2
28,479 + MPMX19_06279 0.82 -1.0
28,479 + MPMX19_06279 0.82 -0.6
28,479 + MPMX19_06279 0.82 +1.4
28,479 + MPMX19_06279 0.82 -0.9
28,479 + MPMX19_06279 0.82 -0.2
28,479 + MPMX19_06279 0.82 +0.0
28,479 + MPMX19_06279 0.82 -0.9
28,480 - MPMX19_06279 0.82 -0.9
28,480 - MPMX19_06279 0.82 +1.1
28,480 - MPMX19_06279 0.82 -0.4
28,480 - MPMX19_06279 0.82 +0.1
28,480 - MPMX19_06279 0.82 +0.7
28,480 - MPMX19_06279 0.82 -0.4
28,480 - MPMX19_06279 0.82 +1.7
28,480 - MPMX19_06279 0.82 +0.0
28,570 - +0.3
28,570 - -0.2
28,570 - +0.7
28,570 - +0.2
28,687 + -1.0
28,700 + +0.0
28,701 - -0.9
28,732 + -1.2
28,732 + +0.3
28,732 + -0.6
28,732 + +0.0
28,732 + -0.6
28,732 + +0.0
28,736 + -2.0
28,737 - -0.4
28,737 - +1.5
28,737 - -0.4
28,795 + -1.7
28,813 - +0.6
29,217 + MPMX19_06280 0.63 +0.7
29,217 + MPMX19_06280 0.63 -2.0
29,217 + MPMX19_06280 0.63 +0.7
29,217 + MPMX19_06280 0.63 -1.9
29,218 - MPMX19_06280 0.64 +0.6
29,218 - MPMX19_06280 0.64 +0.9
29,218 - MPMX19_06280 0.64 +0.0
29,218 - MPMX19_06280 0.64 +0.3
29,218 - MPMX19_06280 0.64 +0.7
29,241 + MPMX19_06280 0.68 +0.4
29,241 + MPMX19_06280 0.68 +0.4
29,241 + MPMX19_06280 0.68 -1.6
29,241 + MPMX19_06280 0.68 +0.7
29,241 + MPMX19_06280 0.68 +0.0
29,241 + MPMX19_06280 0.68 +0.8
29,242 - MPMX19_06280 0.69 +1.9
29,242 - MPMX19_06280 0.69 +0.3
29,242 - MPMX19_06280 0.69 +0.6
29,242 - MPMX19_06280 0.69 +0.7
29,242 - MPMX19_06280 0.69 -0.5
29,242 - MPMX19_06280 0.69 -0.7
29,242 - MPMX19_06280 0.69 -1.7
29,242 - MPMX19_06280 0.69 +0.3
29,242 - MPMX19_06280 0.69 -1.3
29,242 - MPMX19_06280 0.69 +0.0
29,304 + MPMX19_06280 0.82 -0.5
29,304 + MPMX19_06280 0.82 +0.1
29,304 + MPMX19_06280 0.82 +0.3
29,304 + MPMX19_06280 0.82 -2.2
29,304 + MPMX19_06280 0.82 +0.7
29,305 - MPMX19_06280 0.82 +0.6
29,411 + -0.9
29,411 + -0.7
29,411 + -0.5
29,411 + -1.0
29,411 + -0.3
29,412 - -1.9
29,412 - +0.4
29,412 - +1.7
29,462 + MPMX19_06281 0.13 -1.2
29,462 + MPMX19_06281 0.13 +0.3
29,462 + MPMX19_06281 0.13 +1.2
29,463 - MPMX19_06281 0.13 -0.1
29,463 - MPMX19_06281 0.13 +0.3
29,463 - MPMX19_06281 0.13 +0.7
29,638 + MPMX19_06281 0.51 -0.8
29,800 + MPMX19_06281 0.87 -1.3
29,801 - MPMX19_06281 0.87 +1.0
29,801 - MPMX19_06281 0.87 -1.4
29,801 - MPMX19_06281 0.87 -0.2
29,890 + -0.7
29,890 + +0.2
29,891 - -0.2
29,891 - +0.2
30,000 + -0.4
30,000 + -0.3
30,000 + -0.3
30,000 + -1.1
30,213 + +1.4
30,213 + +0.6
30,214 - -0.0
30,214 - +1.1
30,244 + -0.2
30,244 + -0.2
30,285 + -0.7
30,285 + +0.6
30,285 + +0.1
30,286 - -0.5
30,286 - +0.0
30,286 - +0.1
30,286 - -0.5
30,292 + +1.0
30,292 + -1.9
30,292 + -0.2
30,293 - -0.1
30,293 - +0.0
30,305 + -2.4
30,305 + -1.9
30,306 - -0.1
30,307 + +0.8
30,307 + +1.4
30,307 + +1.0
30,307 + -0.9
30,307 + -1.7
30,307 + -0.8
30,308 - -0.4
30,308 - -0.9
30,308 - -0.3
30,308 - -0.5
30,308 - -1.2
30,313 + -0.2
30,314 - -0.6
30,339 - +0.3
30,339 - -1.5

Or see this region's nucleotide sequence