Experiment: NL-CCM; spin-x control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06141 and MPMX19_06142 are separated by 10 nucleotides MPMX19_06142 and MPMX19_06143 are separated by 101 nucleotides MPMX19_06143 and MPMX19_06144 are separated by 86 nucleotides
MPMX19_06141: MPMX19_06141 - Intermembrane phospholipid transport system permease protein MlaE, at 329,070 to 329,846
_06141
MPMX19_06142: MPMX19_06142 - putative ribonucleotide transport ATP-binding protein mkl, at 329,857 to 330,630
_06142
MPMX19_06143: MPMX19_06143 - Endonuclease III, at 330,732 to 331,412
_06143
MPMX19_06144: MPMX19_06144 - hypothetical protein, at 331,499 to 331,729
_06144
Position (kb) 329
330
331 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 328.905 kb on - strand at 328.905 kb on - strand at 328.905 kb on - strand at 328.905 kb on - strand at 329.003 kb on + strand at 329.003 kb on + strand at 329.003 kb on + strand at 329.020 kb on + strand at 329.020 kb on + strand at 329.020 kb on + strand at 329.020 kb on + strand at 329.021 kb on - strand at 329.021 kb on - strand at 329.068 kb on + strand at 329.068 kb on + strand at 329.069 kb on - strand at 329.181 kb on + strand, within MPMX19_06141 at 329.224 kb on - strand, within MPMX19_06141 at 329.224 kb on - strand, within MPMX19_06141 at 329.286 kb on + strand, within MPMX19_06141 at 329.287 kb on - strand, within MPMX19_06141 at 329.481 kb on + strand, within MPMX19_06141 at 329.487 kb on + strand, within MPMX19_06141 at 329.488 kb on - strand, within MPMX19_06141 at 329.488 kb on - strand, within MPMX19_06141 at 329.616 kb on + strand, within MPMX19_06141 at 329.616 kb on + strand, within MPMX19_06141 at 329.617 kb on - strand, within MPMX19_06141 at 329.617 kb on - strand, within MPMX19_06141 at 329.617 kb on - strand, within MPMX19_06141 at 329.617 kb on - strand, within MPMX19_06141 at 329.715 kb on + strand, within MPMX19_06141 at 329.811 kb on + strand at 329.811 kb on + strand at 329.812 kb on - strand at 329.812 kb on - strand at 330.193 kb on - strand, within MPMX19_06142 at 330.505 kb on + strand, within MPMX19_06142 at 330.505 kb on + strand, within MPMX19_06142 at 330.505 kb on + strand, within MPMX19_06142 at 330.506 kb on - strand, within MPMX19_06142 at 330.506 kb on - strand, within MPMX19_06142 at 330.565 kb on + strand at 330.565 kb on + strand at 330.566 kb on - strand at 330.628 kb on + strand at 330.849 kb on + strand, within MPMX19_06143 at 331.221 kb on + strand, within MPMX19_06143 at 331.221 kb on + strand, within MPMX19_06143 at 331.221 kb on + strand, within MPMX19_06143 at 331.221 kb on + strand, within MPMX19_06143 at 331.221 kb on + strand, within MPMX19_06143 at 331.221 kb on + strand, within MPMX19_06143 at 331.222 kb on - strand, within MPMX19_06143 at 331.222 kb on - strand, within MPMX19_06143 at 331.222 kb on - strand, within MPMX19_06143 at 331.222 kb on - strand, within MPMX19_06143 at 331.222 kb on - strand, within MPMX19_06143 at 331.222 kb on - strand, within MPMX19_06143 at 331.222 kb on - strand, within MPMX19_06143 at 331.222 kb on - strand, within MPMX19_06143 at 331.222 kb on - strand, within MPMX19_06143 at 331.222 kb on - strand, within MPMX19_06143 at 331.222 kb on - strand, within MPMX19_06143 at 331.222 kb on - strand, within MPMX19_06143 at 331.222 kb on - strand, within MPMX19_06143 at 331.222 kb on - strand, within MPMX19_06143 at 331.222 kb on - strand, within MPMX19_06143 at 331.222 kb on - strand, within MPMX19_06143 at 331.222 kb on - strand, within MPMX19_06143 at 331.284 kb on + strand, within MPMX19_06143 at 331.284 kb on + strand, within MPMX19_06143 at 331.284 kb on + strand, within MPMX19_06143 at 331.459 kb on + strand at 331.459 kb on + strand at 331.459 kb on + strand at 331.460 kb on - strand at 331.460 kb on - strand at 331.460 kb on - strand at 331.508 kb on + strand at 331.508 kb on + strand at 331.509 kb on - strand at 331.509 kb on - strand at 331.509 kb on - strand at 331.509 kb on - strand at 331.509 kb on - strand at 331.568 kb on + strand, within MPMX19_06144 at 331.569 kb on - strand, within MPMX19_06144 at 331.569 kb on - strand, within MPMX19_06144 at 331.569 kb on - strand, within MPMX19_06144
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; spin-x control remove 328,905 - +0.7 328,905 - -0.3 328,905 - +0.3 328,905 - -0.7 329,003 + -1.1 329,003 + +1.4 329,003 + +0.3 329,020 + +0.7 329,020 + +0.7 329,020 + -0.2 329,020 + +0.8 329,021 - +0.5 329,021 - +0.2 329,068 + -1.4 329,068 + +0.3 329,069 - -0.2 329,181 + MPMX19_06141 0.14 -1.9 329,224 - MPMX19_06141 0.20 +0.1 329,224 - MPMX19_06141 0.20 +0.6 329,286 + MPMX19_06141 0.28 -0.9 329,287 - MPMX19_06141 0.28 +0.3 329,481 + MPMX19_06141 0.53 -0.5 329,487 + MPMX19_06141 0.54 -2.1 329,488 - MPMX19_06141 0.54 -0.9 329,488 - MPMX19_06141 0.54 -1.1 329,616 + MPMX19_06141 0.70 -0.4 329,616 + MPMX19_06141 0.70 +1.2 329,617 - MPMX19_06141 0.70 -2.6 329,617 - MPMX19_06141 0.70 -0.2 329,617 - MPMX19_06141 0.70 -0.2 329,617 - MPMX19_06141 0.70 -1.4 329,715 + MPMX19_06141 0.83 -2.5 329,811 + -3.0 329,811 + +0.5 329,812 - -1.8 329,812 - +1.1 330,193 - MPMX19_06142 0.43 -1.8 330,505 + MPMX19_06142 0.84 +0.8 330,505 + MPMX19_06142 0.84 -0.1 330,505 + MPMX19_06142 0.84 -0.3 330,506 - MPMX19_06142 0.84 -0.5 330,506 - MPMX19_06142 0.84 +1.6 330,565 + -0.6 330,565 + -0.8 330,566 - +0.4 330,628 + -1.5 330,849 + MPMX19_06143 0.17 -2.1 331,221 + MPMX19_06143 0.72 -2.3 331,221 + MPMX19_06143 0.72 -1.2 331,221 + MPMX19_06143 0.72 -1.0 331,221 + MPMX19_06143 0.72 +0.2 331,221 + MPMX19_06143 0.72 -1.2 331,221 + MPMX19_06143 0.72 +0.0 331,222 - MPMX19_06143 0.72 -1.9 331,222 - MPMX19_06143 0.72 +0.5 331,222 - MPMX19_06143 0.72 +0.1 331,222 - MPMX19_06143 0.72 -1.2 331,222 - MPMX19_06143 0.72 +0.7 331,222 - MPMX19_06143 0.72 -1.3 331,222 - MPMX19_06143 0.72 +0.2 331,222 - MPMX19_06143 0.72 -0.8 331,222 - MPMX19_06143 0.72 -0.5 331,222 - MPMX19_06143 0.72 +0.2 331,222 - MPMX19_06143 0.72 -1.2 331,222 - MPMX19_06143 0.72 -0.4 331,222 - MPMX19_06143 0.72 +0.3 331,222 - MPMX19_06143 0.72 -0.0 331,222 - MPMX19_06143 0.72 -0.9 331,222 - MPMX19_06143 0.72 -0.2 331,222 - MPMX19_06143 0.72 -0.5 331,284 + MPMX19_06143 0.81 +0.4 331,284 + MPMX19_06143 0.81 +0.2 331,284 + MPMX19_06143 0.81 +0.1 331,459 + -0.9 331,459 + -1.9 331,459 + -0.2 331,460 - -1.4 331,460 - -0.4 331,460 - -0.5 331,508 + +0.7 331,508 + -2.2 331,509 - -0.7 331,509 - +0.4 331,509 - -0.0 331,509 - +0.8 331,509 - -0.8 331,568 + MPMX19_06144 0.30 +0.2 331,569 - MPMX19_06144 0.30 -0.1 331,569 - MPMX19_06144 0.30 -0.1 331,569 - MPMX19_06144 0.30 -1.8
Or see this region's nucleotide sequence