Experiment: NL-CCM; spin-x control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05045 and MPMX19_05046 are separated by 79 nucleotides MPMX19_05046 and MPMX19_05047 are separated by 127 nucleotides
MPMX19_05045: MPMX19_05045 - Succinate-semialdehyde dehydrogenase [NADP(+)], at 529,105 to 530,598
_05045
MPMX19_05046: MPMX19_05046 - Acetolactate synthase isozyme 2 large subunit, at 530,678 to 532,336
_05046
MPMX19_05047: MPMX19_05047 - Glycine cleavage system transcriptional activator, at 532,464 to 533,360
_05047
Position (kb) 530
531
532
533 Strain fitness (log2 ratio) -2
-1
0
1
2 at 529.780 kb on + strand, within MPMX19_05045 at 529.780 kb on + strand, within MPMX19_05045 at 529.780 kb on + strand, within MPMX19_05045 at 529.780 kb on + strand, within MPMX19_05045 at 529.781 kb on - strand, within MPMX19_05045 at 529.781 kb on - strand, within MPMX19_05045 at 529.781 kb on - strand, within MPMX19_05045 at 529.781 kb on - strand, within MPMX19_05045 at 529.781 kb on - strand, within MPMX19_05045 at 529.781 kb on - strand, within MPMX19_05045 at 529.781 kb on - strand, within MPMX19_05045 at 529.781 kb on - strand, within MPMX19_05045 at 529.781 kb on - strand, within MPMX19_05045 at 529.781 kb on - strand, within MPMX19_05045 at 529.781 kb on - strand, within MPMX19_05045 at 529.781 kb on - strand, within MPMX19_05045 at 529.781 kb on - strand, within MPMX19_05045 at 529.781 kb on - strand, within MPMX19_05045 at 530.211 kb on + strand, within MPMX19_05045 at 530.211 kb on + strand, within MPMX19_05045 at 530.211 kb on + strand, within MPMX19_05045 at 530.212 kb on - strand, within MPMX19_05045 at 530.212 kb on - strand, within MPMX19_05045 at 530.212 kb on - strand, within MPMX19_05045 at 530.246 kb on + strand, within MPMX19_05045 at 530.246 kb on + strand, within MPMX19_05045 at 530.321 kb on + strand, within MPMX19_05045 at 530.321 kb on + strand, within MPMX19_05045 at 530.321 kb on + strand, within MPMX19_05045 at 530.322 kb on - strand, within MPMX19_05045 at 530.322 kb on - strand, within MPMX19_05045 at 530.322 kb on - strand, within MPMX19_05045 at 530.322 kb on - strand, within MPMX19_05045 at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.631 kb on + strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.632 kb on - strand at 530.666 kb on + strand at 530.666 kb on + strand at 530.666 kb on + strand at 530.667 kb on - strand at 530.667 kb on - strand at 530.667 kb on - strand at 530.908 kb on - strand, within MPMX19_05046 at 530.908 kb on - strand, within MPMX19_05046 at 530.908 kb on - strand, within MPMX19_05046 at 530.940 kb on + strand, within MPMX19_05046 at 530.940 kb on + strand, within MPMX19_05046 at 530.940 kb on + strand, within MPMX19_05046 at 530.940 kb on + strand, within MPMX19_05046 at 530.940 kb on + strand, within MPMX19_05046 at 530.940 kb on + strand, within MPMX19_05046 at 530.940 kb on + strand, within MPMX19_05046 at 530.940 kb on + strand, within MPMX19_05046 at 530.940 kb on + strand, within MPMX19_05046 at 530.940 kb on + strand, within MPMX19_05046 at 530.940 kb on + strand, within MPMX19_05046 at 530.940 kb on + strand, within MPMX19_05046 at 530.940 kb on + strand, within MPMX19_05046 at 530.941 kb on - strand, within MPMX19_05046 at 530.941 kb on - strand, within MPMX19_05046 at 530.941 kb on - strand, within MPMX19_05046 at 530.941 kb on - strand, within MPMX19_05046 at 530.941 kb on - strand, within MPMX19_05046 at 530.941 kb on - strand, within MPMX19_05046 at 530.941 kb on - strand, within MPMX19_05046 at 530.941 kb on - strand, within MPMX19_05046 at 530.941 kb on - strand, within MPMX19_05046 at 531.100 kb on - strand, within MPMX19_05046 at 531.177 kb on + strand, within MPMX19_05046 at 531.177 kb on + strand, within MPMX19_05046 at 531.177 kb on + strand, within MPMX19_05046 at 531.177 kb on + strand, within MPMX19_05046 at 531.177 kb on + strand, within MPMX19_05046 at 531.177 kb on + strand, within MPMX19_05046 at 531.177 kb on + strand, within MPMX19_05046 at 531.177 kb on + strand, within MPMX19_05046 at 531.177 kb on + strand, within MPMX19_05046 at 531.178 kb on - strand, within MPMX19_05046 at 531.178 kb on - strand, within MPMX19_05046 at 531.178 kb on - strand, within MPMX19_05046 at 531.178 kb on - strand, within MPMX19_05046 at 531.178 kb on - strand, within MPMX19_05046 at 531.178 kb on - strand, within MPMX19_05046 at 531.178 kb on - strand, within MPMX19_05046 at 531.178 kb on - strand, within MPMX19_05046 at 531.178 kb on - strand, within MPMX19_05046 at 531.178 kb on - strand, within MPMX19_05046 at 531.178 kb on - strand, within MPMX19_05046 at 531.297 kb on + strand, within MPMX19_05046 at 531.297 kb on + strand, within MPMX19_05046 at 531.297 kb on + strand, within MPMX19_05046 at 531.297 kb on + strand, within MPMX19_05046 at 531.297 kb on + strand, within MPMX19_05046 at 531.297 kb on + strand, within MPMX19_05046 at 531.297 kb on + strand, within MPMX19_05046 at 531.297 kb on + strand, within MPMX19_05046 at 531.298 kb on - strand, within MPMX19_05046 at 531.298 kb on - strand, within MPMX19_05046 at 531.298 kb on - strand, within MPMX19_05046 at 531.298 kb on - strand, within MPMX19_05046 at 531.298 kb on - strand, within MPMX19_05046 at 531.298 kb on - strand, within MPMX19_05046 at 531.298 kb on - strand, within MPMX19_05046 at 531.298 kb on - strand, within MPMX19_05046 at 531.298 kb on - strand, within MPMX19_05046 at 531.298 kb on - strand, within MPMX19_05046 at 531.298 kb on - strand, within MPMX19_05046 at 531.298 kb on - strand, within MPMX19_05046 at 531.298 kb on - strand, within MPMX19_05046 at 531.298 kb on - strand, within MPMX19_05046 at 531.298 kb on - strand, within MPMX19_05046 at 531.298 kb on - strand, within MPMX19_05046 at 531.414 kb on + strand, within MPMX19_05046 at 531.415 kb on - strand, within MPMX19_05046 at 531.415 kb on - strand, within MPMX19_05046 at 531.415 kb on - strand, within MPMX19_05046 at 531.492 kb on + strand, within MPMX19_05046 at 531.492 kb on + strand, within MPMX19_05046 at 531.492 kb on + strand, within MPMX19_05046 at 531.492 kb on + strand, within MPMX19_05046 at 531.492 kb on + strand, within MPMX19_05046 at 531.492 kb on - strand, within MPMX19_05046 at 531.493 kb on - strand, within MPMX19_05046 at 531.493 kb on - strand, within MPMX19_05046 at 531.493 kb on - strand, within MPMX19_05046 at 531.493 kb on - strand, within MPMX19_05046 at 531.493 kb on - strand, within MPMX19_05046 at 531.493 kb on - strand, within MPMX19_05046 at 531.493 kb on - strand, within MPMX19_05046 at 531.603 kb on + strand, within MPMX19_05046 at 531.604 kb on - strand, within MPMX19_05046 at 531.604 kb on - strand, within MPMX19_05046 at 531.993 kb on + strand, within MPMX19_05046 at 532.254 kb on + strand at 532.254 kb on + strand at 532.254 kb on + strand at 532.254 kb on + strand at 532.254 kb on + strand at 532.254 kb on + strand at 532.254 kb on + strand at 532.255 kb on - strand at 532.255 kb on - strand at 532.255 kb on - strand at 532.255 kb on - strand at 532.255 kb on - strand at 532.255 kb on - strand at 532.255 kb on - strand at 532.360 kb on - strand at 532.360 kb on - strand at 532.434 kb on + strand at 532.434 kb on + strand at 532.435 kb on - strand at 532.677 kb on + strand, within MPMX19_05047 at 532.677 kb on + strand, within MPMX19_05047 at 532.677 kb on + strand, within MPMX19_05047 at 532.677 kb on + strand, within MPMX19_05047 at 532.677 kb on + strand, within MPMX19_05047 at 532.677 kb on + strand, within MPMX19_05047 at 532.678 kb on - strand, within MPMX19_05047 at 532.678 kb on - strand, within MPMX19_05047 at 533.268 kb on + strand, within MPMX19_05047 at 533.268 kb on + strand, within MPMX19_05047 at 533.268 kb on + strand, within MPMX19_05047 at 533.268 kb on + strand, within MPMX19_05047 at 533.268 kb on + strand, within MPMX19_05047 at 533.268 kb on + strand, within MPMX19_05047 at 533.268 kb on + strand, within MPMX19_05047 at 533.268 kb on + strand, within MPMX19_05047 at 533.268 kb on + strand, within MPMX19_05047 at 533.269 kb on - strand, within MPMX19_05047 at 533.269 kb on - strand, within MPMX19_05047 at 533.269 kb on - strand, within MPMX19_05047 at 533.269 kb on - strand, within MPMX19_05047 at 533.269 kb on - strand, within MPMX19_05047 at 533.269 kb on - strand, within MPMX19_05047 at 533.269 kb on - strand, within MPMX19_05047 at 533.269 kb on - strand, within MPMX19_05047 at 533.269 kb on - strand, within MPMX19_05047 at 533.269 kb on - strand, within MPMX19_05047 at 533.269 kb on - strand, within MPMX19_05047 at 533.271 kb on + strand at 533.271 kb on + strand at 533.271 kb on + strand at 533.271 kb on + strand at 533.271 kb on + strand at 533.271 kb on + strand at 533.272 kb on - strand at 533.272 kb on - strand at 533.272 kb on - strand at 533.272 kb on - strand at 533.272 kb on - strand at 533.272 kb on - strand at 533.272 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; spin-x control remove 529,780 + MPMX19_05045 0.45 -0.3 529,780 + MPMX19_05045 0.45 -0.3 529,780 + MPMX19_05045 0.45 +0.1 529,780 + MPMX19_05045 0.45 +0.5 529,781 - MPMX19_05045 0.45 -1.0 529,781 - MPMX19_05045 0.45 -1.4 529,781 - MPMX19_05045 0.45 +0.9 529,781 - MPMX19_05045 0.45 -0.8 529,781 - MPMX19_05045 0.45 -1.7 529,781 - MPMX19_05045 0.45 -0.0 529,781 - MPMX19_05045 0.45 -1.2 529,781 - MPMX19_05045 0.45 -1.5 529,781 - MPMX19_05045 0.45 +0.4 529,781 - MPMX19_05045 0.45 +0.2 529,781 - MPMX19_05045 0.45 -1.5 529,781 - MPMX19_05045 0.45 +0.7 529,781 - MPMX19_05045 0.45 +0.3 529,781 - MPMX19_05045 0.45 +0.0 530,211 + MPMX19_05045 0.74 +1.3 530,211 + MPMX19_05045 0.74 +0.4 530,211 + MPMX19_05045 0.74 -0.0 530,212 - MPMX19_05045 0.74 +0.3 530,212 - MPMX19_05045 0.74 +1.2 530,212 - MPMX19_05045 0.74 +0.7 530,246 + MPMX19_05045 0.76 +1.1 530,246 + MPMX19_05045 0.76 -0.0 530,321 + MPMX19_05045 0.81 +0.4 530,321 + MPMX19_05045 0.81 -0.4 530,321 + MPMX19_05045 0.81 -0.7 530,322 - MPMX19_05045 0.81 +0.0 530,322 - MPMX19_05045 0.81 +2.5 530,322 - MPMX19_05045 0.81 +2.0 530,322 - MPMX19_05045 0.81 -1.4 530,631 + +0.1 530,631 + -0.6 530,631 + -2.0 530,631 + -1.7 530,631 + -0.4 530,631 + +0.3 530,631 + -2.5 530,631 + +0.4 530,631 + -0.6 530,631 + -0.3 530,631 + -1.4 530,631 + +1.3 530,631 + -0.9 530,631 + -0.0 530,631 + -0.1 530,631 + +0.1 530,631 + -1.4 530,631 + -0.7 530,631 + +0.3 530,631 + -0.1 530,631 + -0.9 530,631 + +1.6 530,631 + +0.3 530,631 + +1.1 530,631 + -1.7 530,632 - +0.6 530,632 - -1.3 530,632 - -1.5 530,632 - -1.3 530,632 - +0.8 530,632 - -2.0 530,632 - +0.7 530,632 - -1.0 530,632 - +1.9 530,632 - +0.1 530,632 - +0.7 530,632 - +0.4 530,632 - -0.3 530,632 - -0.1 530,632 - -1.6 530,632 - -1.7 530,632 - -2.4 530,632 - +0.6 530,632 - +1.1 530,632 - -0.2 530,632 - -1.0 530,632 - +0.4 530,632 - -0.3 530,632 - -2.0 530,666 + -1.4 530,666 + +0.2 530,666 + -0.2 530,667 - -0.7 530,667 - -1.2 530,667 - +0.7 530,908 - MPMX19_05046 0.14 -0.2 530,908 - MPMX19_05046 0.14 -1.0 530,908 - MPMX19_05046 0.14 -0.7 530,940 + MPMX19_05046 0.16 +0.1 530,940 + MPMX19_05046 0.16 -0.7 530,940 + MPMX19_05046 0.16 +1.3 530,940 + MPMX19_05046 0.16 +1.5 530,940 + MPMX19_05046 0.16 -0.7 530,940 + MPMX19_05046 0.16 -1.7 530,940 + MPMX19_05046 0.16 +0.8 530,940 + MPMX19_05046 0.16 +0.8 530,940 + MPMX19_05046 0.16 +0.0 530,940 + MPMX19_05046 0.16 +0.1 530,940 + MPMX19_05046 0.16 -1.5 530,940 + MPMX19_05046 0.16 +0.3 530,940 + MPMX19_05046 0.16 +0.5 530,941 - MPMX19_05046 0.16 -0.3 530,941 - MPMX19_05046 0.16 +0.4 530,941 - MPMX19_05046 0.16 -0.6 530,941 - MPMX19_05046 0.16 -0.8 530,941 - MPMX19_05046 0.16 -0.3 530,941 - MPMX19_05046 0.16 +2.6 530,941 - MPMX19_05046 0.16 +0.3 530,941 - MPMX19_05046 0.16 -0.5 530,941 - MPMX19_05046 0.16 +0.9 531,100 - MPMX19_05046 0.25 +0.1 531,177 + MPMX19_05046 0.30 -0.9 531,177 + MPMX19_05046 0.30 -0.5 531,177 + MPMX19_05046 0.30 -0.0 531,177 + MPMX19_05046 0.30 -2.0 531,177 + MPMX19_05046 0.30 +0.7 531,177 + MPMX19_05046 0.30 -0.0 531,177 + MPMX19_05046 0.30 +0.5 531,177 + MPMX19_05046 0.30 -0.9 531,177 + MPMX19_05046 0.30 -0.7 531,178 - MPMX19_05046 0.30 +0.4 531,178 - MPMX19_05046 0.30 +0.7 531,178 - MPMX19_05046 0.30 -1.0 531,178 - MPMX19_05046 0.30 -0.6 531,178 - MPMX19_05046 0.30 +1.1 531,178 - MPMX19_05046 0.30 -0.9 531,178 - MPMX19_05046 0.30 +0.6 531,178 - MPMX19_05046 0.30 +0.8 531,178 - MPMX19_05046 0.30 -0.3 531,178 - MPMX19_05046 0.30 +0.8 531,178 - MPMX19_05046 0.30 +0.5 531,297 + MPMX19_05046 0.37 -1.4 531,297 + MPMX19_05046 0.37 +1.3 531,297 + MPMX19_05046 0.37 -1.0 531,297 + MPMX19_05046 0.37 -1.0 531,297 + MPMX19_05046 0.37 +0.1 531,297 + MPMX19_05046 0.37 +0.4 531,297 + MPMX19_05046 0.37 +0.0 531,297 + MPMX19_05046 0.37 +0.3 531,298 - MPMX19_05046 0.37 +0.3 531,298 - MPMX19_05046 0.37 +1.1 531,298 - MPMX19_05046 0.37 +0.3 531,298 - MPMX19_05046 0.37 -1.0 531,298 - MPMX19_05046 0.37 -1.6 531,298 - MPMX19_05046 0.37 -0.7 531,298 - MPMX19_05046 0.37 -0.4 531,298 - MPMX19_05046 0.37 +0.8 531,298 - MPMX19_05046 0.37 -1.5 531,298 - MPMX19_05046 0.37 +1.3 531,298 - MPMX19_05046 0.37 +0.6 531,298 - MPMX19_05046 0.37 +0.2 531,298 - MPMX19_05046 0.37 +0.8 531,298 - MPMX19_05046 0.37 +0.1 531,298 - MPMX19_05046 0.37 -0.2 531,298 - MPMX19_05046 0.37 +0.7 531,414 + MPMX19_05046 0.44 +0.6 531,415 - MPMX19_05046 0.44 -0.2 531,415 - MPMX19_05046 0.44 -2.3 531,415 - MPMX19_05046 0.44 -0.6 531,492 + MPMX19_05046 0.49 -0.2 531,492 + MPMX19_05046 0.49 +0.1 531,492 + MPMX19_05046 0.49 +1.0 531,492 + MPMX19_05046 0.49 +0.1 531,492 + MPMX19_05046 0.49 +0.4 531,492 - MPMX19_05046 0.49 +1.1 531,493 - MPMX19_05046 0.49 +1.5 531,493 - MPMX19_05046 0.49 +0.7 531,493 - MPMX19_05046 0.49 -1.0 531,493 - MPMX19_05046 0.49 +0.1 531,493 - MPMX19_05046 0.49 +0.2 531,493 - MPMX19_05046 0.49 -0.1 531,493 - MPMX19_05046 0.49 +1.3 531,603 + MPMX19_05046 0.56 -1.0 531,604 - MPMX19_05046 0.56 +0.0 531,604 - MPMX19_05046 0.56 -0.2 531,993 + MPMX19_05046 0.79 -1.7 532,254 + -2.7 532,254 + -1.4 532,254 + -1.9 532,254 + +2.6 532,254 + +0.6 532,254 + -0.3 532,254 + +1.9 532,255 - -1.9 532,255 - +0.5 532,255 - +0.6 532,255 - +1.9 532,255 - -0.5 532,255 - +2.1 532,255 - -2.6 532,360 - -1.5 532,360 - +0.8 532,434 + -1.4 532,434 + -0.3 532,435 - +1.2 532,677 + MPMX19_05047 0.24 -0.8 532,677 + MPMX19_05047 0.24 +0.7 532,677 + MPMX19_05047 0.24 -1.7 532,677 + MPMX19_05047 0.24 -0.9 532,677 + MPMX19_05047 0.24 +1.0 532,677 + MPMX19_05047 0.24 -0.4 532,678 - MPMX19_05047 0.24 +0.0 532,678 - MPMX19_05047 0.24 -0.3 533,268 + MPMX19_05047 0.90 +0.2 533,268 + MPMX19_05047 0.90 -0.3 533,268 + MPMX19_05047 0.90 -0.8 533,268 + MPMX19_05047 0.90 -1.0 533,268 + MPMX19_05047 0.90 -1.5 533,268 + MPMX19_05047 0.90 +1.9 533,268 + MPMX19_05047 0.90 +0.1 533,268 + MPMX19_05047 0.90 +1.3 533,268 + MPMX19_05047 0.90 -0.9 533,269 - MPMX19_05047 0.90 +0.2 533,269 - MPMX19_05047 0.90 +1.6 533,269 - MPMX19_05047 0.90 +0.1 533,269 - MPMX19_05047 0.90 -2.2 533,269 - MPMX19_05047 0.90 +0.7 533,269 - MPMX19_05047 0.90 -1.7 533,269 - MPMX19_05047 0.90 +0.1 533,269 - MPMX19_05047 0.90 -1.0 533,269 - MPMX19_05047 0.90 -1.2 533,269 - MPMX19_05047 0.90 +0.3 533,269 - MPMX19_05047 0.90 -0.3 533,271 + -1.0 533,271 + -1.0 533,271 + -0.3 533,271 + -0.5 533,271 + -0.1 533,271 + -0.0 533,272 - +0.5 533,272 - +0.7 533,272 - -1.7 533,272 - -0.4 533,272 - +0.6 533,272 - +0.5 533,272 - +0.8
Or see this region's nucleotide sequence