Experiment: NL-CCM; spin-x control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05039 and MPMX19_05040 are separated by 238 nucleotides MPMX19_05040 and MPMX19_05041 overlap by 4 nucleotides MPMX19_05041 and MPMX19_05042 are separated by 204 nucleotides MPMX19_05042 and MPMX19_05043 are separated by 77 nucleotides
MPMX19_05039: MPMX19_05039 - ATP synthase subunit beta, at 523,443 to 524,906
_05039
MPMX19_05040: MPMX19_05040 - hypothetical protein, at 525,145 to 525,705
_05040
MPMX19_05041: MPMX19_05041 - 1,3,6,8-tetrahydroxynaphthalene synthase, at 525,702 to 526,760
_05041
MPMX19_05042: MPMX19_05042 - hypothetical protein, at 526,965 to 527,513
_05042
MPMX19_05043: MPMX19_05043 - hypothetical protein, at 527,591 to 528,196
_05043
Position (kb) 525
526
527 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 525.085 kb on + strand at 525.085 kb on + strand at 525.085 kb on + strand at 525.085 kb on + strand at 525.085 kb on + strand at 525.085 kb on + strand at 525.085 kb on + strand at 525.085 kb on + strand at 525.085 kb on + strand at 525.086 kb on - strand at 525.086 kb on - strand at 525.086 kb on - strand at 525.086 kb on - strand at 525.086 kb on - strand at 525.086 kb on - strand at 525.086 kb on - strand at 525.086 kb on - strand at 525.086 kb on - strand at 525.086 kb on - strand at 525.086 kb on - strand at 525.086 kb on - strand at 525.146 kb on + strand at 525.251 kb on + strand, within MPMX19_05040 at 525.252 kb on - strand, within MPMX19_05040 at 525.308 kb on + strand, within MPMX19_05040 at 525.308 kb on + strand, within MPMX19_05040 at 525.308 kb on + strand, within MPMX19_05040 at 525.308 kb on + strand, within MPMX19_05040 at 525.308 kb on + strand, within MPMX19_05040 at 525.308 kb on + strand, within MPMX19_05040 at 525.308 kb on + strand, within MPMX19_05040 at 525.308 kb on + strand, within MPMX19_05040 at 525.308 kb on + strand, within MPMX19_05040 at 525.308 kb on + strand, within MPMX19_05040 at 525.309 kb on - strand, within MPMX19_05040 at 525.309 kb on - strand, within MPMX19_05040 at 525.309 kb on - strand, within MPMX19_05040 at 525.309 kb on - strand, within MPMX19_05040 at 525.309 kb on - strand, within MPMX19_05040 at 525.469 kb on + strand, within MPMX19_05040 at 525.470 kb on - strand, within MPMX19_05040 at 525.470 kb on - strand, within MPMX19_05040 at 525.566 kb on + strand, within MPMX19_05040 at 526.044 kb on + strand, within MPMX19_05041 at 526.044 kb on + strand, within MPMX19_05041 at 526.044 kb on + strand, within MPMX19_05041 at 526.044 kb on + strand, within MPMX19_05041 at 526.044 kb on + strand, within MPMX19_05041 at 526.044 kb on + strand, within MPMX19_05041 at 526.044 kb on + strand, within MPMX19_05041 at 526.044 kb on + strand, within MPMX19_05041 at 526.045 kb on - strand, within MPMX19_05041 at 526.045 kb on - strand, within MPMX19_05041 at 526.045 kb on - strand, within MPMX19_05041 at 526.045 kb on - strand, within MPMX19_05041 at 526.045 kb on - strand, within MPMX19_05041 at 526.045 kb on - strand, within MPMX19_05041 at 526.045 kb on - strand, within MPMX19_05041 at 526.045 kb on - strand, within MPMX19_05041 at 526.045 kb on - strand, within MPMX19_05041 at 526.045 kb on - strand, within MPMX19_05041 at 526.573 kb on + strand, within MPMX19_05041 at 526.573 kb on + strand, within MPMX19_05041 at 526.573 kb on + strand, within MPMX19_05041 at 526.574 kb on - strand, within MPMX19_05041 at 526.704 kb on + strand at 526.704 kb on + strand at 526.704 kb on + strand at 526.704 kb on + strand at 526.705 kb on - strand at 526.845 kb on + strand at 526.845 kb on + strand at 526.845 kb on + strand at 526.845 kb on + strand at 526.846 kb on - strand at 526.876 kb on + strand at 526.977 kb on + strand at 526.978 kb on - strand at 527.109 kb on + strand, within MPMX19_05042 at 527.109 kb on + strand, within MPMX19_05042 at 527.109 kb on + strand, within MPMX19_05042 at 527.109 kb on + strand, within MPMX19_05042 at 527.109 kb on + strand, within MPMX19_05042 at 527.109 kb on + strand, within MPMX19_05042 at 527.110 kb on - strand, within MPMX19_05042 at 527.110 kb on - strand, within MPMX19_05042 at 527.110 kb on - strand, within MPMX19_05042 at 527.110 kb on - strand, within MPMX19_05042 at 527.110 kb on - strand, within MPMX19_05042 at 527.110 kb on - strand, within MPMX19_05042 at 527.110 kb on - strand, within MPMX19_05042 at 527.110 kb on - strand, within MPMX19_05042 at 527.110 kb on - strand, within MPMX19_05042 at 527.110 kb on - strand, within MPMX19_05042 at 527.110 kb on - strand, within MPMX19_05042 at 527.110 kb on - strand, within MPMX19_05042 at 527.178 kb on + strand, within MPMX19_05042 at 527.178 kb on + strand, within MPMX19_05042 at 527.178 kb on + strand, within MPMX19_05042 at 527.178 kb on + strand, within MPMX19_05042 at 527.178 kb on + strand, within MPMX19_05042 at 527.179 kb on - strand, within MPMX19_05042 at 527.179 kb on - strand, within MPMX19_05042 at 527.179 kb on - strand, within MPMX19_05042 at 527.179 kb on - strand, within MPMX19_05042 at 527.184 kb on + strand, within MPMX19_05042 at 527.184 kb on + strand, within MPMX19_05042 at 527.185 kb on - strand, within MPMX19_05042 at 527.185 kb on - strand, within MPMX19_05042 at 527.209 kb on - strand, within MPMX19_05042 at 527.209 kb on - strand, within MPMX19_05042 at 527.271 kb on + strand, within MPMX19_05042 at 527.271 kb on + strand, within MPMX19_05042 at 527.280 kb on + strand, within MPMX19_05042 at 527.281 kb on - strand, within MPMX19_05042 at 527.322 kb on + strand, within MPMX19_05042 at 527.322 kb on + strand, within MPMX19_05042 at 527.322 kb on + strand, within MPMX19_05042 at 527.323 kb on - strand, within MPMX19_05042 at 527.323 kb on - strand, within MPMX19_05042 at 527.323 kb on - strand, within MPMX19_05042 at 527.323 kb on - strand, within MPMX19_05042 at 527.325 kb on + strand, within MPMX19_05042 at 527.325 kb on + strand, within MPMX19_05042 at 527.325 kb on + strand, within MPMX19_05042 at 527.325 kb on + strand, within MPMX19_05042 at 527.326 kb on - strand, within MPMX19_05042 at 527.326 kb on - strand, within MPMX19_05042 at 527.326 kb on - strand, within MPMX19_05042 at 527.326 kb on - strand, within MPMX19_05042 at 527.326 kb on - strand, within MPMX19_05042 at 527.326 kb on - strand, within MPMX19_05042 at 527.355 kb on + strand, within MPMX19_05042 at 527.355 kb on + strand, within MPMX19_05042 at 527.355 kb on + strand, within MPMX19_05042 at 527.355 kb on + strand, within MPMX19_05042 at 527.373 kb on + strand, within MPMX19_05042 at 527.373 kb on + strand, within MPMX19_05042 at 527.374 kb on - strand, within MPMX19_05042 at 527.374 kb on - strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.469 kb on + strand at 527.469 kb on + strand at 527.469 kb on + strand at 527.469 kb on + strand at 527.470 kb on - strand at 527.470 kb on - strand at 527.596 kb on + strand at 527.621 kb on + strand at 527.621 kb on + strand at 527.621 kb on + strand at 527.621 kb on + strand at 527.621 kb on + strand at 527.621 kb on + strand at 527.621 kb on + strand at 527.621 kb on + strand at 527.621 kb on + strand at 527.621 kb on + strand at 527.621 kb on + strand at 527.621 kb on + strand at 527.621 kb on + strand at 527.621 kb on + strand at 527.621 kb on + strand at 527.621 kb on + strand at 527.621 kb on + strand at 527.621 kb on + strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.641 kb on - strand at 527.641 kb on - strand at 527.753 kb on + strand, within MPMX19_05043 at 527.754 kb on - strand, within MPMX19_05043
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; spin-x control remove 525,085 + -0.2 525,085 + +0.5 525,085 + -0.5 525,085 + +0.7 525,085 + -1.3 525,085 + +0.8 525,085 + -2.5 525,085 + +0.6 525,085 + +0.0 525,086 - +2.0 525,086 - -2.0 525,086 - -1.0 525,086 - +0.3 525,086 - -0.3 525,086 - -0.3 525,086 - -0.6 525,086 - +1.0 525,086 - +0.3 525,086 - +1.1 525,086 - -0.5 525,086 - +0.6 525,146 + +0.2 525,251 + MPMX19_05040 0.19 +0.1 525,252 - MPMX19_05040 0.19 -0.5 525,308 + MPMX19_05040 0.29 +0.1 525,308 + MPMX19_05040 0.29 -1.0 525,308 + MPMX19_05040 0.29 +0.7 525,308 + MPMX19_05040 0.29 +0.1 525,308 + MPMX19_05040 0.29 +0.0 525,308 + MPMX19_05040 0.29 +0.1 525,308 + MPMX19_05040 0.29 +1.3 525,308 + MPMX19_05040 0.29 +0.3 525,308 + MPMX19_05040 0.29 -1.3 525,308 + MPMX19_05040 0.29 -0.8 525,309 - MPMX19_05040 0.29 +0.6 525,309 - MPMX19_05040 0.29 -0.2 525,309 - MPMX19_05040 0.29 -0.2 525,309 - MPMX19_05040 0.29 -0.7 525,309 - MPMX19_05040 0.29 +0.1 525,469 + MPMX19_05040 0.58 -0.9 525,470 - MPMX19_05040 0.58 +1.6 525,470 - MPMX19_05040 0.58 -0.2 525,566 + MPMX19_05040 0.75 +0.3 526,044 + MPMX19_05041 0.32 -0.3 526,044 + MPMX19_05041 0.32 -0.0 526,044 + MPMX19_05041 0.32 +0.5 526,044 + MPMX19_05041 0.32 -1.3 526,044 + MPMX19_05041 0.32 -0.4 526,044 + MPMX19_05041 0.32 +0.4 526,044 + MPMX19_05041 0.32 -1.7 526,044 + MPMX19_05041 0.32 +0.6 526,045 - MPMX19_05041 0.32 -0.9 526,045 - MPMX19_05041 0.32 -1.7 526,045 - MPMX19_05041 0.32 -1.2 526,045 - MPMX19_05041 0.32 -0.5 526,045 - MPMX19_05041 0.32 -0.8 526,045 - MPMX19_05041 0.32 -1.3 526,045 - MPMX19_05041 0.32 -0.2 526,045 - MPMX19_05041 0.32 -0.7 526,045 - MPMX19_05041 0.32 -1.0 526,045 - MPMX19_05041 0.32 -2.9 526,573 + MPMX19_05041 0.82 +0.1 526,573 + MPMX19_05041 0.82 -1.0 526,573 + MPMX19_05041 0.82 +0.4 526,574 - MPMX19_05041 0.82 +0.7 526,704 + +0.1 526,704 + -0.6 526,704 + +0.5 526,704 + -0.2 526,705 - -0.7 526,845 + +0.6 526,845 + +0.6 526,845 + +0.6 526,845 + -1.3 526,846 - -0.3 526,876 + -0.5 526,977 + -0.2 526,978 - +1.1 527,109 + MPMX19_05042 0.26 -0.8 527,109 + MPMX19_05042 0.26 -0.2 527,109 + MPMX19_05042 0.26 -0.9 527,109 + MPMX19_05042 0.26 -0.2 527,109 + MPMX19_05042 0.26 -2.0 527,109 + MPMX19_05042 0.26 -1.1 527,110 - MPMX19_05042 0.26 -2.6 527,110 - MPMX19_05042 0.26 -0.1 527,110 - MPMX19_05042 0.26 -1.8 527,110 - MPMX19_05042 0.26 +0.2 527,110 - MPMX19_05042 0.26 +0.8 527,110 - MPMX19_05042 0.26 +0.4 527,110 - MPMX19_05042 0.26 -1.4 527,110 - MPMX19_05042 0.26 -0.7 527,110 - MPMX19_05042 0.26 -0.1 527,110 - MPMX19_05042 0.26 -0.0 527,110 - MPMX19_05042 0.26 +0.6 527,110 - MPMX19_05042 0.26 +0.2 527,178 + MPMX19_05042 0.39 -0.7 527,178 + MPMX19_05042 0.39 +0.6 527,178 + MPMX19_05042 0.39 -0.4 527,178 + MPMX19_05042 0.39 -3.0 527,178 + MPMX19_05042 0.39 -1.6 527,179 - MPMX19_05042 0.39 -1.3 527,179 - MPMX19_05042 0.39 -0.5 527,179 - MPMX19_05042 0.39 -0.7 527,179 - MPMX19_05042 0.39 +1.3 527,184 + MPMX19_05042 0.40 -0.6 527,184 + MPMX19_05042 0.40 -1.0 527,185 - MPMX19_05042 0.40 -1.2 527,185 - MPMX19_05042 0.40 -0.7 527,209 - MPMX19_05042 0.44 -0.8 527,209 - MPMX19_05042 0.44 -0.5 527,271 + MPMX19_05042 0.56 +0.7 527,271 + MPMX19_05042 0.56 -2.5 527,280 + MPMX19_05042 0.57 -0.2 527,281 - MPMX19_05042 0.58 -0.1 527,322 + MPMX19_05042 0.65 +0.8 527,322 + MPMX19_05042 0.65 -1.5 527,322 + MPMX19_05042 0.65 -1.0 527,323 - MPMX19_05042 0.65 -1.3 527,323 - MPMX19_05042 0.65 -0.9 527,323 - MPMX19_05042 0.65 -0.0 527,323 - MPMX19_05042 0.65 +2.0 527,325 + MPMX19_05042 0.66 -1.7 527,325 + MPMX19_05042 0.66 -2.0 527,325 + MPMX19_05042 0.66 -0.7 527,325 + MPMX19_05042 0.66 -1.0 527,326 - MPMX19_05042 0.66 +0.5 527,326 - MPMX19_05042 0.66 -1.7 527,326 - MPMX19_05042 0.66 -0.2 527,326 - MPMX19_05042 0.66 +0.0 527,326 - MPMX19_05042 0.66 -0.4 527,326 - MPMX19_05042 0.66 -1.0 527,355 + MPMX19_05042 0.71 +0.2 527,355 + MPMX19_05042 0.71 +0.3 527,355 + MPMX19_05042 0.71 -0.8 527,355 + MPMX19_05042 0.71 -0.3 527,373 + MPMX19_05042 0.74 -0.6 527,373 + MPMX19_05042 0.74 +1.7 527,374 - MPMX19_05042 0.74 -1.2 527,374 - MPMX19_05042 0.74 -1.3 527,388 + MPMX19_05042 0.77 -0.0 527,388 + MPMX19_05042 0.77 -0.2 527,388 + MPMX19_05042 0.77 +0.2 527,388 + MPMX19_05042 0.77 -0.3 527,388 + MPMX19_05042 0.77 -0.3 527,388 + MPMX19_05042 0.77 +0.2 527,388 + MPMX19_05042 0.77 -0.7 527,388 + MPMX19_05042 0.77 +1.0 527,388 + MPMX19_05042 0.77 -0.5 527,388 + MPMX19_05042 0.77 +0.7 527,388 + MPMX19_05042 0.77 -0.8 527,388 + MPMX19_05042 0.77 -0.2 527,388 + MPMX19_05042 0.77 -1.2 527,388 + MPMX19_05042 0.77 -0.1 527,388 + MPMX19_05042 0.77 -0.7 527,388 + MPMX19_05042 0.77 +0.1 527,388 + MPMX19_05042 0.77 +0.3 527,388 + MPMX19_05042 0.77 -0.3 527,388 + MPMX19_05042 0.77 +1.7 527,388 + MPMX19_05042 0.77 +0.7 527,388 + MPMX19_05042 0.77 -0.7 527,388 + MPMX19_05042 0.77 +0.7 527,389 - MPMX19_05042 0.77 -0.7 527,389 - MPMX19_05042 0.77 -2.0 527,389 - MPMX19_05042 0.77 -0.8 527,389 - MPMX19_05042 0.77 +0.6 527,389 - MPMX19_05042 0.77 +0.2 527,389 - MPMX19_05042 0.77 -0.0 527,389 - MPMX19_05042 0.77 +0.3 527,389 - MPMX19_05042 0.77 -0.4 527,389 - MPMX19_05042 0.77 +0.2 527,389 - MPMX19_05042 0.77 -2.1 527,389 - MPMX19_05042 0.77 +0.1 527,389 - MPMX19_05042 0.77 -1.9 527,389 - MPMX19_05042 0.77 +0.6 527,389 - MPMX19_05042 0.77 +1.0 527,389 - MPMX19_05042 0.77 +0.3 527,389 - MPMX19_05042 0.77 -1.2 527,389 - MPMX19_05042 0.77 +0.3 527,389 - MPMX19_05042 0.77 -1.0 527,389 - MPMX19_05042 0.77 +0.2 527,389 - MPMX19_05042 0.77 -0.1 527,389 - MPMX19_05042 0.77 -2.9 527,389 - MPMX19_05042 0.77 +0.4 527,389 - MPMX19_05042 0.77 -2.0 527,389 - MPMX19_05042 0.77 -0.3 527,389 - MPMX19_05042 0.77 -0.4 527,469 + -2.6 527,469 + +0.2 527,469 + -0.4 527,469 + -0.2 527,470 - -1.5 527,470 - +0.5 527,596 + -0.5 527,621 + -1.0 527,621 + +1.3 527,621 + +0.8 527,621 + -2.0 527,621 + -0.7 527,621 + +0.4 527,621 + -0.3 527,621 + +0.3 527,621 + +0.2 527,621 + -1.0 527,621 + -0.4 527,621 + +0.5 527,621 + +0.6 527,621 + -0.3 527,621 + -0.6 527,621 + +0.2 527,621 + -1.9 527,621 + -0.5 527,622 - -0.9 527,622 - -0.2 527,622 - +0.8 527,622 - +2.0 527,622 - +0.7 527,622 - +0.3 527,622 - -1.0 527,622 - -0.6 527,622 - -0.9 527,622 - -0.9 527,622 - -2.3 527,622 - -1.0 527,622 - -0.0 527,622 - +2.5 527,622 - +1.3 527,622 - +1.6 527,622 - +0.1 527,622 - -1.5 527,622 - -1.5 527,622 - +0.8 527,622 - -0.1 527,622 - -0.4 527,622 - +0.6 527,622 - -0.4 527,622 - -0.8 527,622 - -0.7 527,622 - -2.0 527,641 - -0.9 527,641 - -0.2 527,753 + MPMX19_05043 0.27 +2.0 527,754 - MPMX19_05043 0.27 +0.7
Or see this region's nucleotide sequence