Experiment: NL-CCM; spin-x control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04929 and MPMX19_04930 are separated by 109 nucleotides MPMX19_04930 and MPMX19_04931 are separated by 121 nucleotides
MPMX19_04929: MPMX19_04929 - Glycogen operon protein GlgX, at 388,457 to 390,808
_04929
MPMX19_04930: MPMX19_04930 - Hydrogen peroxide-inducible genes activator, at 390,918 to 391,889
_04930
MPMX19_04931: MPMX19_04931 - Catalase, at 392,011 to 393,462
_04931
Position (kb) 390
391
392 Strain fitness (log2 ratio) -2
-1
0
1
2 at 389.976 kb on + strand, within MPMX19_04929 at 389.976 kb on + strand, within MPMX19_04929 at 389.976 kb on + strand, within MPMX19_04929 at 389.976 kb on + strand, within MPMX19_04929 at 389.977 kb on - strand, within MPMX19_04929 at 389.977 kb on - strand, within MPMX19_04929 at 389.977 kb on - strand, within MPMX19_04929 at 389.977 kb on - strand, within MPMX19_04929 at 390.066 kb on + strand, within MPMX19_04929 at 390.067 kb on - strand, within MPMX19_04929 at 390.102 kb on + strand, within MPMX19_04929 at 390.102 kb on + strand, within MPMX19_04929 at 390.102 kb on + strand, within MPMX19_04929 at 390.102 kb on + strand, within MPMX19_04929 at 390.103 kb on - strand, within MPMX19_04929 at 390.103 kb on - strand, within MPMX19_04929 at 390.111 kb on + strand, within MPMX19_04929 at 390.111 kb on + strand, within MPMX19_04929 at 390.111 kb on + strand, within MPMX19_04929 at 390.111 kb on + strand, within MPMX19_04929 at 390.111 kb on + strand, within MPMX19_04929 at 390.111 kb on + strand, within MPMX19_04929 at 390.111 kb on + strand, within MPMX19_04929 at 390.204 kb on + strand, within MPMX19_04929 at 390.204 kb on + strand, within MPMX19_04929 at 390.204 kb on + strand, within MPMX19_04929 at 390.205 kb on - strand, within MPMX19_04929 at 390.237 kb on + strand, within MPMX19_04929 at 390.237 kb on + strand, within MPMX19_04929 at 390.237 kb on + strand, within MPMX19_04929 at 390.237 kb on + strand, within MPMX19_04929 at 390.237 kb on + strand, within MPMX19_04929 at 390.237 kb on + strand, within MPMX19_04929 at 390.238 kb on - strand, within MPMX19_04929 at 390.238 kb on - strand, within MPMX19_04929 at 390.238 kb on - strand, within MPMX19_04929 at 390.238 kb on - strand, within MPMX19_04929 at 390.238 kb on - strand, within MPMX19_04929 at 390.238 kb on - strand, within MPMX19_04929 at 390.238 kb on - strand, within MPMX19_04929 at 390.238 kb on - strand, within MPMX19_04929 at 390.238 kb on - strand, within MPMX19_04929 at 390.238 kb on - strand, within MPMX19_04929 at 390.303 kb on + strand, within MPMX19_04929 at 390.303 kb on + strand, within MPMX19_04929 at 390.304 kb on - strand, within MPMX19_04929 at 390.304 kb on - strand, within MPMX19_04929 at 390.444 kb on + strand, within MPMX19_04929 at 390.444 kb on + strand, within MPMX19_04929 at 390.444 kb on + strand, within MPMX19_04929 at 390.445 kb on - strand, within MPMX19_04929 at 390.445 kb on - strand, within MPMX19_04929 at 390.495 kb on + strand, within MPMX19_04929 at 390.495 kb on + strand, within MPMX19_04929 at 390.495 kb on + strand, within MPMX19_04929 at 390.496 kb on - strand, within MPMX19_04929 at 390.496 kb on - strand, within MPMX19_04929 at 390.496 kb on - strand, within MPMX19_04929 at 390.496 kb on - strand, within MPMX19_04929 at 390.496 kb on - strand, within MPMX19_04929 at 390.496 kb on - strand, within MPMX19_04929 at 390.496 kb on - strand, within MPMX19_04929 at 390.549 kb on + strand, within MPMX19_04929 at 390.549 kb on + strand, within MPMX19_04929 at 390.550 kb on - strand, within MPMX19_04929 at 390.550 kb on - strand, within MPMX19_04929 at 390.573 kb on + strand at 390.573 kb on + strand at 390.573 kb on + strand at 390.573 kb on + strand at 390.573 kb on + strand at 390.574 kb on - strand at 390.603 kb on + strand at 390.603 kb on + strand at 390.603 kb on + strand at 390.604 kb on - strand at 390.604 kb on - strand at 390.937 kb on - strand at 390.937 kb on - strand at 390.937 kb on - strand at 390.937 kb on - strand at 391.087 kb on + strand, within MPMX19_04930 at 391.088 kb on - strand, within MPMX19_04930 at 391.088 kb on - strand, within MPMX19_04930 at 391.088 kb on - strand, within MPMX19_04930 at 391.157 kb on + strand, within MPMX19_04930 at 391.157 kb on + strand, within MPMX19_04930 at 391.157 kb on + strand, within MPMX19_04930 at 391.157 kb on + strand, within MPMX19_04930 at 391.157 kb on + strand, within MPMX19_04930 at 391.157 kb on + strand, within MPMX19_04930 at 391.157 kb on + strand, within MPMX19_04930 at 391.157 kb on + strand, within MPMX19_04930 at 391.157 kb on + strand, within MPMX19_04930 at 391.157 kb on + strand, within MPMX19_04930 at 391.158 kb on - strand, within MPMX19_04930 at 391.158 kb on - strand, within MPMX19_04930 at 391.158 kb on - strand, within MPMX19_04930 at 391.158 kb on - strand, within MPMX19_04930 at 391.158 kb on - strand, within MPMX19_04930 at 391.538 kb on + strand, within MPMX19_04930 at 391.538 kb on + strand, within MPMX19_04930 at 391.539 kb on - strand, within MPMX19_04930 at 391.539 kb on - strand, within MPMX19_04930 at 391.539 kb on - strand, within MPMX19_04930 at 391.539 kb on - strand, within MPMX19_04930 at 391.552 kb on + strand, within MPMX19_04930 at 391.552 kb on + strand, within MPMX19_04930 at 391.552 kb on + strand, within MPMX19_04930 at 391.552 kb on + strand, within MPMX19_04930 at 391.552 kb on + strand, within MPMX19_04930 at 391.552 kb on + strand, within MPMX19_04930 at 391.553 kb on - strand, within MPMX19_04930 at 391.553 kb on - strand, within MPMX19_04930 at 391.553 kb on - strand, within MPMX19_04930 at 391.840 kb on + strand at 391.840 kb on + strand at 391.840 kb on + strand at 391.840 kb on + strand at 391.840 kb on + strand at 391.840 kb on + strand at 391.840 kb on + strand at 391.840 kb on + strand at 391.840 kb on + strand at 391.840 kb on + strand at 391.840 kb on + strand at 391.840 kb on + strand at 391.840 kb on + strand at 391.840 kb on + strand at 391.840 kb on + strand at 391.840 kb on + strand at 391.840 kb on + strand at 391.840 kb on + strand at 391.841 kb on - strand at 391.841 kb on - strand at 391.841 kb on - strand at 391.841 kb on - strand at 391.841 kb on - strand at 391.841 kb on - strand at 391.841 kb on - strand at 391.841 kb on - strand at 391.841 kb on - strand at 391.841 kb on - strand at 391.841 kb on - strand at 391.841 kb on - strand at 391.841 kb on - strand at 391.841 kb on - strand at 391.841 kb on - strand at 391.841 kb on - strand at 391.841 kb on - strand at 391.841 kb on - strand at 391.841 kb on - strand at 391.841 kb on - strand at 391.841 kb on - strand at 391.841 kb on - strand at 391.889 kb on + strand at 391.889 kb on + strand at 391.889 kb on + strand at 391.890 kb on - strand at 391.919 kb on - strand at 391.919 kb on - strand at 391.919 kb on - strand at 391.929 kb on + strand at 391.930 kb on - strand at 391.930 kb on - strand at 391.931 kb on + strand at 391.931 kb on + strand at 391.932 kb on - strand at 391.932 kb on - strand at 391.932 kb on - strand at 392.185 kb on + strand, within MPMX19_04931 at 392.185 kb on + strand, within MPMX19_04931 at 392.185 kb on + strand, within MPMX19_04931 at 392.186 kb on - strand, within MPMX19_04931 at 392.186 kb on - strand, within MPMX19_04931 at 392.350 kb on + strand, within MPMX19_04931 at 392.350 kb on + strand, within MPMX19_04931 at 392.350 kb on + strand, within MPMX19_04931 at 392.350 kb on + strand, within MPMX19_04931 at 392.350 kb on + strand, within MPMX19_04931 at 392.350 kb on + strand, within MPMX19_04931 at 392.351 kb on - strand, within MPMX19_04931 at 392.351 kb on - strand, within MPMX19_04931 at 392.351 kb on - strand, within MPMX19_04931 at 392.351 kb on - strand, within MPMX19_04931 at 392.353 kb on - strand, within MPMX19_04931 at 392.353 kb on - strand, within MPMX19_04931 at 392.368 kb on + strand, within MPMX19_04931 at 392.368 kb on + strand, within MPMX19_04931 at 392.368 kb on + strand, within MPMX19_04931 at 392.368 kb on + strand, within MPMX19_04931 at 392.369 kb on - strand, within MPMX19_04931 at 392.369 kb on - strand, within MPMX19_04931 at 392.369 kb on - strand, within MPMX19_04931 at 392.369 kb on - strand, within MPMX19_04931 at 392.369 kb on - strand, within MPMX19_04931 at 392.369 kb on - strand, within MPMX19_04931 at 392.369 kb on - strand, within MPMX19_04931 at 392.369 kb on - strand, within MPMX19_04931 at 392.369 kb on - strand, within MPMX19_04931 at 392.641 kb on + strand, within MPMX19_04931 at 392.641 kb on + strand, within MPMX19_04931 at 392.641 kb on + strand, within MPMX19_04931 at 392.642 kb on - strand, within MPMX19_04931 at 392.642 kb on - strand, within MPMX19_04931 at 392.737 kb on + strand, within MPMX19_04931 at 392.737 kb on + strand, within MPMX19_04931 at 392.737 kb on + strand, within MPMX19_04931 at 392.738 kb on - strand, within MPMX19_04931 at 392.738 kb on - strand, within MPMX19_04931 at 392.738 kb on - strand, within MPMX19_04931 at 392.738 kb on - strand, within MPMX19_04931
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; spin-x control remove 389,976 + MPMX19_04929 0.65 -1.5 389,976 + MPMX19_04929 0.65 -1.4 389,976 + MPMX19_04929 0.65 +1.1 389,976 + MPMX19_04929 0.65 +0.3 389,977 - MPMX19_04929 0.65 +0.2 389,977 - MPMX19_04929 0.65 -1.2 389,977 - MPMX19_04929 0.65 +0.5 389,977 - MPMX19_04929 0.65 +0.9 390,066 + MPMX19_04929 0.68 +0.1 390,067 - MPMX19_04929 0.68 -0.1 390,102 + MPMX19_04929 0.70 +2.7 390,102 + MPMX19_04929 0.70 +0.0 390,102 + MPMX19_04929 0.70 +1.2 390,102 + MPMX19_04929 0.70 +0.1 390,103 - MPMX19_04929 0.70 -1.2 390,103 - MPMX19_04929 0.70 -1.0 390,111 + MPMX19_04929 0.70 -1.7 390,111 + MPMX19_04929 0.70 -1.7 390,111 + MPMX19_04929 0.70 +0.9 390,111 + MPMX19_04929 0.70 -1.0 390,111 + MPMX19_04929 0.70 +1.2 390,111 + MPMX19_04929 0.70 +0.9 390,111 + MPMX19_04929 0.70 +0.9 390,204 + MPMX19_04929 0.74 -0.7 390,204 + MPMX19_04929 0.74 +0.3 390,204 + MPMX19_04929 0.74 -0.8 390,205 - MPMX19_04929 0.74 +0.2 390,237 + MPMX19_04929 0.76 -0.2 390,237 + MPMX19_04929 0.76 +0.1 390,237 + MPMX19_04929 0.76 +1.0 390,237 + MPMX19_04929 0.76 +0.0 390,237 + MPMX19_04929 0.76 +0.5 390,237 + MPMX19_04929 0.76 -0.1 390,238 - MPMX19_04929 0.76 -1.0 390,238 - MPMX19_04929 0.76 -1.1 390,238 - MPMX19_04929 0.76 +0.0 390,238 - MPMX19_04929 0.76 -1.0 390,238 - MPMX19_04929 0.76 -0.8 390,238 - MPMX19_04929 0.76 +1.0 390,238 - MPMX19_04929 0.76 -0.1 390,238 - MPMX19_04929 0.76 -0.7 390,238 - MPMX19_04929 0.76 -0.0 390,238 - MPMX19_04929 0.76 +0.3 390,303 + MPMX19_04929 0.78 -2.2 390,303 + MPMX19_04929 0.78 -0.8 390,304 - MPMX19_04929 0.79 -1.7 390,304 - MPMX19_04929 0.79 -0.0 390,444 + MPMX19_04929 0.84 +0.8 390,444 + MPMX19_04929 0.84 +1.5 390,444 + MPMX19_04929 0.84 +0.9 390,445 - MPMX19_04929 0.85 +0.8 390,445 - MPMX19_04929 0.85 -0.9 390,495 + MPMX19_04929 0.87 -0.6 390,495 + MPMX19_04929 0.87 -1.7 390,495 + MPMX19_04929 0.87 -0.7 390,496 - MPMX19_04929 0.87 +0.5 390,496 - MPMX19_04929 0.87 -0.1 390,496 - MPMX19_04929 0.87 -2.5 390,496 - MPMX19_04929 0.87 +0.6 390,496 - MPMX19_04929 0.87 +0.2 390,496 - MPMX19_04929 0.87 -0.9 390,496 - MPMX19_04929 0.87 -2.0 390,549 + MPMX19_04929 0.89 -1.1 390,549 + MPMX19_04929 0.89 -1.0 390,550 - MPMX19_04929 0.89 +0.3 390,550 - MPMX19_04929 0.89 -0.3 390,573 + -0.1 390,573 + +0.6 390,573 + +0.7 390,573 + +1.2 390,573 + -1.7 390,574 - +0.5 390,603 + +0.6 390,603 + +1.0 390,603 + -0.1 390,604 - -0.2 390,604 - -0.7 390,937 - +0.5 390,937 - +0.3 390,937 - -0.7 390,937 - -0.1 391,087 + MPMX19_04930 0.17 -1.2 391,088 - MPMX19_04930 0.17 +0.5 391,088 - MPMX19_04930 0.17 -0.1 391,088 - MPMX19_04930 0.17 -1.2 391,157 + MPMX19_04930 0.25 -0.7 391,157 + MPMX19_04930 0.25 -0.5 391,157 + MPMX19_04930 0.25 -0.3 391,157 + MPMX19_04930 0.25 +1.3 391,157 + MPMX19_04930 0.25 -0.8 391,157 + MPMX19_04930 0.25 +0.1 391,157 + MPMX19_04930 0.25 -0.7 391,157 + MPMX19_04930 0.25 -0.4 391,157 + MPMX19_04930 0.25 -1.2 391,157 + MPMX19_04930 0.25 -2.0 391,158 - MPMX19_04930 0.25 +0.1 391,158 - MPMX19_04930 0.25 -1.0 391,158 - MPMX19_04930 0.25 -1.5 391,158 - MPMX19_04930 0.25 -0.7 391,158 - MPMX19_04930 0.25 -0.2 391,538 + MPMX19_04930 0.64 +0.5 391,538 + MPMX19_04930 0.64 -1.7 391,539 - MPMX19_04930 0.64 +0.5 391,539 - MPMX19_04930 0.64 -1.0 391,539 - MPMX19_04930 0.64 -0.7 391,539 - MPMX19_04930 0.64 -2.5 391,552 + MPMX19_04930 0.65 -0.9 391,552 + MPMX19_04930 0.65 -1.2 391,552 + MPMX19_04930 0.65 -1.7 391,552 + MPMX19_04930 0.65 -1.4 391,552 + MPMX19_04930 0.65 -1.8 391,552 + MPMX19_04930 0.65 -0.2 391,553 - MPMX19_04930 0.65 -0.9 391,553 - MPMX19_04930 0.65 -0.7 391,553 - MPMX19_04930 0.65 +0.2 391,840 + -2.4 391,840 + +0.7 391,840 + +1.2 391,840 + -0.2 391,840 + -1.7 391,840 + -1.2 391,840 + -1.9 391,840 + +0.3 391,840 + +0.6 391,840 + +0.2 391,840 + +0.8 391,840 + -1.1 391,840 + -0.7 391,840 + -0.1 391,840 + -1.2 391,840 + +0.2 391,840 + +1.7 391,840 + -0.7 391,841 - +0.2 391,841 - -1.0 391,841 - +0.5 391,841 - -1.0 391,841 - +0.2 391,841 - -0.2 391,841 - -0.4 391,841 - +0.6 391,841 - -0.8 391,841 - -1.7 391,841 - +0.9 391,841 - +0.3 391,841 - +1.3 391,841 - +0.6 391,841 - +0.9 391,841 - +0.2 391,841 - -0.1 391,841 - -1.5 391,841 - +0.8 391,841 - -1.2 391,841 - -0.4 391,841 - -1.2 391,889 + -0.5 391,889 + -0.2 391,889 + -0.7 391,890 - +0.2 391,919 - -0.5 391,919 - -1.8 391,919 - +1.3 391,929 + +0.5 391,930 - -0.7 391,930 - -0.6 391,931 + +1.6 391,931 + +0.9 391,932 - -0.2 391,932 - -1.4 391,932 - -2.0 392,185 + MPMX19_04931 0.12 -0.1 392,185 + MPMX19_04931 0.12 +0.0 392,185 + MPMX19_04931 0.12 -1.0 392,186 - MPMX19_04931 0.12 -1.8 392,186 - MPMX19_04931 0.12 -1.5 392,350 + MPMX19_04931 0.23 -0.4 392,350 + MPMX19_04931 0.23 -1.6 392,350 + MPMX19_04931 0.23 -2.0 392,350 + MPMX19_04931 0.23 +0.5 392,350 + MPMX19_04931 0.23 -1.2 392,350 + MPMX19_04931 0.23 +0.3 392,351 - MPMX19_04931 0.23 -1.0 392,351 - MPMX19_04931 0.23 +0.3 392,351 - MPMX19_04931 0.23 +0.1 392,351 - MPMX19_04931 0.23 -0.8 392,353 - MPMX19_04931 0.24 +0.1 392,353 - MPMX19_04931 0.24 +1.1 392,368 + MPMX19_04931 0.25 +1.0 392,368 + MPMX19_04931 0.25 -2.0 392,368 + MPMX19_04931 0.25 -2.4 392,368 + MPMX19_04931 0.25 -0.7 392,369 - MPMX19_04931 0.25 -1.6 392,369 - MPMX19_04931 0.25 -1.1 392,369 - MPMX19_04931 0.25 +0.3 392,369 - MPMX19_04931 0.25 -2.0 392,369 - MPMX19_04931 0.25 -0.6 392,369 - MPMX19_04931 0.25 -0.7 392,369 - MPMX19_04931 0.25 -2.1 392,369 - MPMX19_04931 0.25 -0.6 392,369 - MPMX19_04931 0.25 -1.2 392,641 + MPMX19_04931 0.43 -1.0 392,641 + MPMX19_04931 0.43 +0.2 392,641 + MPMX19_04931 0.43 -0.7 392,642 - MPMX19_04931 0.43 -0.3 392,642 - MPMX19_04931 0.43 +0.6 392,737 + MPMX19_04931 0.50 -0.1 392,737 + MPMX19_04931 0.50 -0.8 392,737 + MPMX19_04931 0.50 -0.8 392,738 - MPMX19_04931 0.50 -1.1 392,738 - MPMX19_04931 0.50 -0.7 392,738 - MPMX19_04931 0.50 -0.6 392,738 - MPMX19_04931 0.50 +0.2
Or see this region's nucleotide sequence