Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04538

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04536 and MPMX19_04537 are separated by 46 nucleotidesMPMX19_04537 and MPMX19_04538 are separated by 252 nucleotidesMPMX19_04538 and MPMX19_04539 are separated by 92 nucleotidesMPMX19_04539 and MPMX19_04540 overlap by 8 nucleotides MPMX19_04536: MPMX19_04536 - D-amino acid dehydrogenase 1, at 909,444 to 910,691 _04536 MPMX19_04537: MPMX19_04537 - 2-iminobutanoate/2-iminopropanoate deaminase, at 910,738 to 911,088 _04537 MPMX19_04538: MPMX19_04538 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 911,341 to 912,474 _04538 MPMX19_04539: MPMX19_04539 - High-affinity branched-chain amino acid transport system permease protein LivH, at 912,567 to 913,466 _04539 MPMX19_04540: MPMX19_04540 - hypothetical protein, at 913,459 to 914,358 _04540 Position (kb) 911 912 913Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 910.351 kb on + strand, within MPMX19_04536at 910.351 kb on + strand, within MPMX19_04536at 910.352 kb on - strand, within MPMX19_04536at 910.534 kb on + strand, within MPMX19_04536at 910.534 kb on + strand, within MPMX19_04536at 910.534 kb on + strand, within MPMX19_04536at 910.534 kb on + strand, within MPMX19_04536at 910.534 kb on + strand, within MPMX19_04536at 910.534 kb on + strand, within MPMX19_04536at 910.535 kb on - strand, within MPMX19_04536at 910.535 kb on - strand, within MPMX19_04536at 910.535 kb on - strand, within MPMX19_04536at 910.642 kb on + strandat 910.642 kb on + strandat 910.643 kb on - strandat 910.643 kb on - strandat 911.021 kb on + strand, within MPMX19_04537at 911.022 kb on - strand, within MPMX19_04537at 911.022 kb on - strand, within MPMX19_04537at 911.073 kb on + strandat 911.073 kb on + strandat 911.671 kb on + strand, within MPMX19_04538at 911.671 kb on + strand, within MPMX19_04538at 911.671 kb on + strand, within MPMX19_04538at 911.671 kb on + strand, within MPMX19_04538at 911.671 kb on + strand, within MPMX19_04538at 911.671 kb on + strand, within MPMX19_04538at 911.671 kb on + strand, within MPMX19_04538at 911.671 kb on + strand, within MPMX19_04538at 911.671 kb on + strand, within MPMX19_04538at 911.671 kb on + strand, within MPMX19_04538at 911.672 kb on - strand, within MPMX19_04538at 911.672 kb on - strand, within MPMX19_04538at 911.672 kb on - strand, within MPMX19_04538at 911.672 kb on - strand, within MPMX19_04538at 911.672 kb on - strand, within MPMX19_04538at 911.704 kb on + strand, within MPMX19_04538at 911.704 kb on + strand, within MPMX19_04538at 911.704 kb on + strand, within MPMX19_04538at 911.705 kb on - strand, within MPMX19_04538at 911.705 kb on - strand, within MPMX19_04538at 911.705 kb on - strand, within MPMX19_04538at 911.705 kb on - strand, within MPMX19_04538at 911.836 kb on + strand, within MPMX19_04538at 911.837 kb on - strand, within MPMX19_04538at 911.884 kb on + strand, within MPMX19_04538at 911.899 kb on + strand, within MPMX19_04538at 911.980 kb on + strand, within MPMX19_04538at 911.981 kb on - strand, within MPMX19_04538at 912.031 kb on + strand, within MPMX19_04538at 912.031 kb on + strand, within MPMX19_04538at 912.031 kb on + strand, within MPMX19_04538at 912.031 kb on + strand, within MPMX19_04538at 912.031 kb on + strand, within MPMX19_04538at 912.031 kb on + strand, within MPMX19_04538at 912.032 kb on - strand, within MPMX19_04538at 912.032 kb on - strand, within MPMX19_04538at 912.032 kb on - strand, within MPMX19_04538at 912.032 kb on - strand, within MPMX19_04538at 912.032 kb on - strand, within MPMX19_04538at 912.115 kb on + strand, within MPMX19_04538at 912.115 kb on + strand, within MPMX19_04538at 912.115 kb on + strand, within MPMX19_04538at 912.115 kb on + strand, within MPMX19_04538at 912.115 kb on + strand, within MPMX19_04538at 912.115 kb on + strand, within MPMX19_04538at 912.115 kb on + strand, within MPMX19_04538at 912.115 kb on + strand, within MPMX19_04538at 912.115 kb on + strand, within MPMX19_04538at 912.115 kb on + strand, within MPMX19_04538at 912.115 kb on + strand, within MPMX19_04538at 912.115 kb on + strand, within MPMX19_04538at 912.115 kb on + strand, within MPMX19_04538at 912.115 kb on + strand, within MPMX19_04538at 912.116 kb on - strand, within MPMX19_04538at 912.116 kb on - strand, within MPMX19_04538at 912.116 kb on - strand, within MPMX19_04538at 912.116 kb on - strand, within MPMX19_04538at 912.116 kb on - strand, within MPMX19_04538at 912.116 kb on - strand, within MPMX19_04538at 912.116 kb on - strand, within MPMX19_04538at 912.116 kb on - strand, within MPMX19_04538at 912.116 kb on - strand, within MPMX19_04538at 912.116 kb on - strand, within MPMX19_04538at 912.116 kb on - strand, within MPMX19_04538at 912.116 kb on - strand, within MPMX19_04538at 912.116 kb on - strand, within MPMX19_04538at 912.116 kb on - strand, within MPMX19_04538at 912.116 kb on - strand, within MPMX19_04538at 912.116 kb on - strand, within MPMX19_04538at 912.116 kb on - strand, within MPMX19_04538at 912.184 kb on + strand, within MPMX19_04538at 912.184 kb on + strand, within MPMX19_04538at 912.184 kb on + strand, within MPMX19_04538at 912.184 kb on + strand, within MPMX19_04538at 912.184 kb on + strand, within MPMX19_04538at 912.184 kb on + strand, within MPMX19_04538at 912.184 kb on + strand, within MPMX19_04538at 912.184 kb on + strand, within MPMX19_04538at 912.184 kb on + strand, within MPMX19_04538at 912.184 kb on + strand, within MPMX19_04538at 912.184 kb on + strand, within MPMX19_04538at 912.184 kb on + strand, within MPMX19_04538at 912.184 kb on + strand, within MPMX19_04538at 912.184 kb on + strand, within MPMX19_04538at 912.184 kb on + strand, within MPMX19_04538at 912.185 kb on - strand, within MPMX19_04538at 912.185 kb on - strand, within MPMX19_04538at 912.185 kb on - strand, within MPMX19_04538at 912.185 kb on - strand, within MPMX19_04538at 912.185 kb on - strand, within MPMX19_04538at 912.185 kb on - strand, within MPMX19_04538at 912.185 kb on - strand, within MPMX19_04538at 912.185 kb on - strand, within MPMX19_04538at 912.185 kb on - strand, within MPMX19_04538at 912.185 kb on - strand, within MPMX19_04538at 912.185 kb on - strand, within MPMX19_04538at 912.185 kb on - strand, within MPMX19_04538at 912.185 kb on - strand, within MPMX19_04538at 912.185 kb on - strand, within MPMX19_04538at 912.185 kb on - strand, within MPMX19_04538at 912.185 kb on - strand, within MPMX19_04538at 912.185 kb on - strand, within MPMX19_04538at 912.185 kb on - strand, within MPMX19_04538at 912.220 kb on + strand, within MPMX19_04538at 912.220 kb on + strand, within MPMX19_04538at 912.265 kb on + strand, within MPMX19_04538at 912.265 kb on + strand, within MPMX19_04538at 912.271 kb on + strand, within MPMX19_04538at 912.271 kb on + strand, within MPMX19_04538at 912.271 kb on + strand, within MPMX19_04538at 912.271 kb on + strand, within MPMX19_04538at 912.271 kb on + strand, within MPMX19_04538at 912.271 kb on + strand, within MPMX19_04538at 912.272 kb on - strand, within MPMX19_04538at 912.272 kb on - strand, within MPMX19_04538at 912.272 kb on - strand, within MPMX19_04538at 912.272 kb on - strand, within MPMX19_04538at 912.272 kb on - strand, within MPMX19_04538at 912.272 kb on - strand, within MPMX19_04538at 912.272 kb on - strand, within MPMX19_04538at 912.272 kb on - strand, within MPMX19_04538at 912.272 kb on - strand, within MPMX19_04538at 912.272 kb on - strand, within MPMX19_04538at 912.364 kb on + strandat 912.364 kb on + strandat 912.364 kb on + strandat 912.365 kb on - strandat 912.365 kb on - strandat 912.424 kb on + strandat 912.424 kb on + strandat 912.424 kb on + strandat 912.424 kb on + strandat 912.424 kb on + strandat 912.424 kb on + strandat 912.425 kb on - strandat 912.425 kb on - strandat 912.425 kb on - strandat 912.425 kb on - strandat 912.425 kb on - strandat 912.425 kb on - strandat 912.425 kb on - strandat 912.425 kb on - strandat 912.425 kb on - strandat 912.425 kb on - strandat 912.425 kb on - strandat 912.425 kb on - strandat 912.425 kb on - strandat 912.425 kb on - strandat 912.439 kb on + strandat 912.439 kb on + strandat 912.439 kb on + strandat 912.439 kb on + strandat 912.439 kb on + strandat 912.439 kb on + strandat 912.440 kb on - strandat 912.440 kb on - strandat 912.472 kb on + strandat 912.472 kb on + strandat 912.472 kb on + strandat 912.472 kb on + strandat 912.473 kb on - strandat 912.473 kb on - strandat 912.559 kb on + strandat 912.559 kb on + strandat 912.559 kb on + strandat 912.559 kb on + strandat 912.559 kb on + strandat 912.559 kb on + strandat 912.559 kb on + strandat 912.559 kb on + strandat 912.559 kb on + strandat 912.559 kb on + strandat 912.559 kb on + strandat 912.559 kb on + strandat 912.559 kb on + strandat 912.559 kb on + strandat 912.559 kb on + strandat 912.559 kb on + strandat 912.559 kb on + strandat 912.559 kb on + strandat 912.559 kb on + strandat 912.559 kb on + strandat 912.559 kb on + strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.560 kb on - strandat 912.577 kb on + strandat 912.578 kb on - strandat 912.578 kb on - strandat 912.578 kb on - strandat 912.642 kb on + strandat 912.642 kb on + strandat 912.642 kb on + strandat 913.362 kb on + strand, within MPMX19_04539at 913.362 kb on + strand, within MPMX19_04539at 913.363 kb on - strand, within MPMX19_04539at 913.423 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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910,351 + MPMX19_04536 0.73 +0.9
910,351 + MPMX19_04536 0.73 -1.1
910,352 - MPMX19_04536 0.73 -1.4
910,534 + MPMX19_04536 0.87 -0.9
910,534 + MPMX19_04536 0.87 +0.7
910,534 + MPMX19_04536 0.87 +2.0
910,534 + MPMX19_04536 0.87 -1.6
910,534 + MPMX19_04536 0.87 -2.1
910,534 + MPMX19_04536 0.87 -0.2
910,535 - MPMX19_04536 0.87 -1.4
910,535 - MPMX19_04536 0.87 +0.2
910,535 - MPMX19_04536 0.87 -1.0
910,642 + -1.1
910,642 + +1.2
910,643 - +0.8
910,643 - -2.8
911,021 + MPMX19_04537 0.81 -2.4
911,022 - MPMX19_04537 0.81 -0.2
911,022 - MPMX19_04537 0.81 -1.8
911,073 + +0.0
911,073 + -0.5
911,671 + MPMX19_04538 0.29 -0.9
911,671 + MPMX19_04538 0.29 +0.8
911,671 + MPMX19_04538 0.29 +0.3
911,671 + MPMX19_04538 0.29 -1.3
911,671 + MPMX19_04538 0.29 -0.0
911,671 + MPMX19_04538 0.29 -0.2
911,671 + MPMX19_04538 0.29 +0.6
911,671 + MPMX19_04538 0.29 +1.1
911,671 + MPMX19_04538 0.29 -0.5
911,671 + MPMX19_04538 0.29 +0.0
911,672 - MPMX19_04538 0.29 -1.8
911,672 - MPMX19_04538 0.29 +1.6
911,672 - MPMX19_04538 0.29 +0.9
911,672 - MPMX19_04538 0.29 -0.8
911,672 - MPMX19_04538 0.29 +0.1
911,704 + MPMX19_04538 0.32 -2.1
911,704 + MPMX19_04538 0.32 +3.4
911,704 + MPMX19_04538 0.32 -0.8
911,705 - MPMX19_04538 0.32 +0.4
911,705 - MPMX19_04538 0.32 -1.3
911,705 - MPMX19_04538 0.32 +1.4
911,705 - MPMX19_04538 0.32 -0.7
911,836 + MPMX19_04538 0.44 +1.4
911,837 - MPMX19_04538 0.44 -0.5
911,884 + MPMX19_04538 0.48 -1.3
911,899 + MPMX19_04538 0.49 +0.8
911,980 + MPMX19_04538 0.56 -1.9
911,981 - MPMX19_04538 0.56 +0.1
912,031 + MPMX19_04538 0.61 -0.3
912,031 + MPMX19_04538 0.61 -0.0
912,031 + MPMX19_04538 0.61 +0.0
912,031 + MPMX19_04538 0.61 +0.7
912,031 + MPMX19_04538 0.61 +0.6
912,031 + MPMX19_04538 0.61 -2.2
912,032 - MPMX19_04538 0.61 +0.4
912,032 - MPMX19_04538 0.61 -0.2
912,032 - MPMX19_04538 0.61 -0.6
912,032 - MPMX19_04538 0.61 +0.2
912,032 - MPMX19_04538 0.61 -1.3
912,115 + MPMX19_04538 0.68 -0.4
912,115 + MPMX19_04538 0.68 -0.3
912,115 + MPMX19_04538 0.68 +0.3
912,115 + MPMX19_04538 0.68 -1.4
912,115 + MPMX19_04538 0.68 -2.1
912,115 + MPMX19_04538 0.68 -0.8
912,115 + MPMX19_04538 0.68 +0.7
912,115 + MPMX19_04538 0.68 -0.3
912,115 + MPMX19_04538 0.68 +0.6
912,115 + MPMX19_04538 0.68 -1.6
912,115 + MPMX19_04538 0.68 +1.4
912,115 + MPMX19_04538 0.68 -2.2
912,115 + MPMX19_04538 0.68 -0.8
912,115 + MPMX19_04538 0.68 +0.6
912,116 - MPMX19_04538 0.68 +0.7
912,116 - MPMX19_04538 0.68 +0.4
912,116 - MPMX19_04538 0.68 +1.0
912,116 - MPMX19_04538 0.68 -0.7
912,116 - MPMX19_04538 0.68 -1.4
912,116 - MPMX19_04538 0.68 -0.2
912,116 - MPMX19_04538 0.68 +1.3
912,116 - MPMX19_04538 0.68 -2.3
912,116 - MPMX19_04538 0.68 -0.2
912,116 - MPMX19_04538 0.68 -2.7
912,116 - MPMX19_04538 0.68 +0.2
912,116 - MPMX19_04538 0.68 -0.8
912,116 - MPMX19_04538 0.68 +0.2
912,116 - MPMX19_04538 0.68 -0.2
912,116 - MPMX19_04538 0.68 -0.9
912,116 - MPMX19_04538 0.68 -2.1
912,116 - MPMX19_04538 0.68 -0.4
912,184 + MPMX19_04538 0.74 -0.5
912,184 + MPMX19_04538 0.74 -0.3
912,184 + MPMX19_04538 0.74 +0.0
912,184 + MPMX19_04538 0.74 +1.3
912,184 + MPMX19_04538 0.74 -2.4
912,184 + MPMX19_04538 0.74 +0.8
912,184 + MPMX19_04538 0.74 +1.0
912,184 + MPMX19_04538 0.74 -1.2
912,184 + MPMX19_04538 0.74 -0.5
912,184 + MPMX19_04538 0.74 -1.6
912,184 + MPMX19_04538 0.74 -0.1
912,184 + MPMX19_04538 0.74 +0.8
912,184 + MPMX19_04538 0.74 +0.7
912,184 + MPMX19_04538 0.74 -1.7
912,184 + MPMX19_04538 0.74 -1.6
912,185 - MPMX19_04538 0.74 +0.0
912,185 - MPMX19_04538 0.74 -0.6
912,185 - MPMX19_04538 0.74 +1.3
912,185 - MPMX19_04538 0.74 -2.1
912,185 - MPMX19_04538 0.74 -0.8
912,185 - MPMX19_04538 0.74 -1.4
912,185 - MPMX19_04538 0.74 -0.5
912,185 - MPMX19_04538 0.74 -0.7
912,185 - MPMX19_04538 0.74 +0.5
912,185 - MPMX19_04538 0.74 +0.4
912,185 - MPMX19_04538 0.74 -0.2
912,185 - MPMX19_04538 0.74 -0.5
912,185 - MPMX19_04538 0.74 -0.9
912,185 - MPMX19_04538 0.74 +0.1
912,185 - MPMX19_04538 0.74 -1.1
912,185 - MPMX19_04538 0.74 -2.2
912,185 - MPMX19_04538 0.74 +0.8
912,185 - MPMX19_04538 0.74 -1.5
912,220 + MPMX19_04538 0.78 +0.4
912,220 + MPMX19_04538 0.78 +0.9
912,265 + MPMX19_04538 0.81 +0.3
912,265 + MPMX19_04538 0.81 -0.5
912,271 + MPMX19_04538 0.82 +1.1
912,271 + MPMX19_04538 0.82 -0.7
912,271 + MPMX19_04538 0.82 +1.1
912,271 + MPMX19_04538 0.82 -0.7
912,271 + MPMX19_04538 0.82 -0.7
912,271 + MPMX19_04538 0.82 +0.5
912,272 - MPMX19_04538 0.82 -1.0
912,272 - MPMX19_04538 0.82 +0.7
912,272 - MPMX19_04538 0.82 -0.2
912,272 - MPMX19_04538 0.82 +1.2
912,272 - MPMX19_04538 0.82 -0.0
912,272 - MPMX19_04538 0.82 -0.8
912,272 - MPMX19_04538 0.82 +1.4
912,272 - MPMX19_04538 0.82 +0.1
912,272 - MPMX19_04538 0.82 +0.2
912,272 - MPMX19_04538 0.82 -0.9
912,364 + +0.3
912,364 + +0.3
912,364 + -1.5
912,365 - +0.3
912,365 - -1.4
912,424 + +0.9
912,424 + -0.0
912,424 + +0.4
912,424 + -0.7
912,424 + +1.1
912,424 + -0.7
912,425 - +0.2
912,425 - -1.1
912,425 - +1.1
912,425 - +0.1
912,425 - +0.8
912,425 - +0.8
912,425 - +1.3
912,425 - +1.4
912,425 - +0.4
912,425 - +0.4
912,425 - +1.0
912,425 - +0.5
912,425 - -2.3
912,425 - +0.1
912,439 + -3.3
912,439 + -2.7
912,439 + -0.7
912,439 + -0.6
912,439 + -0.8
912,439 + -0.2
912,440 - -0.5
912,440 - -1.4
912,472 + +0.2
912,472 + -0.0
912,472 + -0.3
912,472 + -0.3
912,473 - +1.0
912,473 - -1.8
912,559 + -0.9
912,559 + -0.9
912,559 + +1.1
912,559 + +0.1
912,559 + +0.2
912,559 + -0.0
912,559 + +0.2
912,559 + -0.0
912,559 + +1.5
912,559 + -0.7
912,559 + -1.9
912,559 + -1.1
912,559 + +0.6
912,559 + -0.1
912,559 + -0.2
912,559 + +0.4
912,559 + -1.2
912,559 + +1.8
912,559 + -0.3
912,559 + -2.6
912,559 + +0.3
912,560 - -0.9
912,560 - -1.9
912,560 - -0.5
912,560 - -1.8
912,560 - +2.1
912,560 - -0.6
912,560 - -0.6
912,560 - -0.1
912,560 - +1.4
912,560 - +0.4
912,560 - -1.6
912,560 - +0.3
912,560 - +1.0
912,560 - -0.3
912,560 - +0.8
912,560 - +1.4
912,560 - +0.4
912,560 - +0.3
912,560 - +0.2
912,560 - -1.2
912,560 - -0.5
912,560 - -1.6
912,560 - +0.2
912,560 - -0.6
912,560 - -0.7
912,560 - -0.5
912,560 - -2.1
912,577 + +0.7
912,578 - +0.3
912,578 - +0.6
912,578 - -1.9
912,642 + -0.8
912,642 + +0.4
912,642 + +0.9
913,362 + MPMX19_04539 0.88 -0.8
913,362 + MPMX19_04539 0.88 -2.8
913,363 - MPMX19_04539 0.88 -1.4
913,423 - +0.4

Or see this region's nucleotide sequence