Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03622

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03621 and MPMX19_03622 are separated by 256 nucleotidesMPMX19_03622 and MPMX19_03623 overlap by 53 nucleotides MPMX19_03621: MPMX19_03621 - N-acetylglucosamine repressor, at 1,054,844 to 1,056,073 _03621 MPMX19_03622: MPMX19_03622 - Ribose import ATP-binding protein RbsA, at 1,056,330 to 1,057,844 _03622 MPMX19_03623: MPMX19_03623 - Ribose import permease protein RbsC, at 1,057,792 to 1,058,829 _03623 Position (kb) 1056 1057 1058Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1055.356 kb on + strand, within MPMX19_03621at 1055.356 kb on + strand, within MPMX19_03621at 1055.356 kb on + strand, within MPMX19_03621at 1055.357 kb on - strand, within MPMX19_03621at 1055.357 kb on - strand, within MPMX19_03621at 1055.357 kb on - strand, within MPMX19_03621at 1055.357 kb on - strand, within MPMX19_03621at 1055.357 kb on - strand, within MPMX19_03621at 1055.357 kb on - strand, within MPMX19_03621at 1055.357 kb on - strand, within MPMX19_03621at 1055.357 kb on - strand, within MPMX19_03621at 1055.357 kb on - strand, within MPMX19_03621at 1055.357 kb on - strand, within MPMX19_03621at 1055.394 kb on + strand, within MPMX19_03621at 1055.395 kb on - strand, within MPMX19_03621at 1055.538 kb on + strand, within MPMX19_03621at 1055.538 kb on + strand, within MPMX19_03621at 1055.538 kb on + strand, within MPMX19_03621at 1055.538 kb on + strand, within MPMX19_03621at 1055.538 kb on + strand, within MPMX19_03621at 1055.538 kb on + strand, within MPMX19_03621at 1055.539 kb on - strand, within MPMX19_03621at 1055.539 kb on - strand, within MPMX19_03621at 1055.539 kb on - strand, within MPMX19_03621at 1055.539 kb on - strand, within MPMX19_03621at 1055.539 kb on - strand, within MPMX19_03621at 1055.539 kb on - strand, within MPMX19_03621at 1055.539 kb on - strand, within MPMX19_03621at 1055.565 kb on + strand, within MPMX19_03621at 1056.182 kb on - strandat 1056.182 kb on - strandat 1056.379 kb on + strandat 1056.380 kb on - strandat 1056.380 kb on - strandat 1056.487 kb on - strand, within MPMX19_03622at 1056.912 kb on + strand, within MPMX19_03622at 1056.912 kb on + strand, within MPMX19_03622at 1056.912 kb on + strand, within MPMX19_03622at 1056.912 kb on + strand, within MPMX19_03622at 1056.912 kb on + strand, within MPMX19_03622at 1056.912 kb on + strand, within MPMX19_03622at 1056.912 kb on + strand, within MPMX19_03622at 1056.912 kb on + strand, within MPMX19_03622at 1056.912 kb on + strand, within MPMX19_03622at 1056.912 kb on + strand, within MPMX19_03622at 1056.912 kb on + strand, within MPMX19_03622at 1056.912 kb on + strand, within MPMX19_03622at 1056.912 kb on + strand, within MPMX19_03622at 1056.913 kb on - strand, within MPMX19_03622at 1056.913 kb on - strand, within MPMX19_03622at 1056.913 kb on - strand, within MPMX19_03622at 1056.913 kb on - strand, within MPMX19_03622at 1056.913 kb on - strand, within MPMX19_03622at 1056.913 kb on - strand, within MPMX19_03622at 1056.913 kb on - strand, within MPMX19_03622at 1056.913 kb on - strand, within MPMX19_03622at 1056.913 kb on - strand, within MPMX19_03622at 1056.913 kb on - strand, within MPMX19_03622at 1056.913 kb on - strand, within MPMX19_03622at 1056.913 kb on - strand, within MPMX19_03622at 1056.913 kb on - strand, within MPMX19_03622at 1056.913 kb on - strand, within MPMX19_03622at 1056.913 kb on - strand, within MPMX19_03622at 1056.913 kb on - strand, within MPMX19_03622at 1056.913 kb on - strand, within MPMX19_03622at 1057.323 kb on + strand, within MPMX19_03622at 1057.323 kb on + strand, within MPMX19_03622at 1057.323 kb on + strand, within MPMX19_03622at 1057.323 kb on + strand, within MPMX19_03622at 1057.323 kb on + strand, within MPMX19_03622at 1057.324 kb on - strand, within MPMX19_03622at 1057.324 kb on - strand, within MPMX19_03622at 1057.324 kb on - strand, within MPMX19_03622at 1057.626 kb on + strand, within MPMX19_03622at 1057.626 kb on + strand, within MPMX19_03622at 1057.626 kb on + strand, within MPMX19_03622at 1057.626 kb on + strand, within MPMX19_03622at 1057.626 kb on + strand, within MPMX19_03622at 1057.626 kb on + strand, within MPMX19_03622at 1057.626 kb on + strand, within MPMX19_03622at 1057.626 kb on + strand, within MPMX19_03622at 1057.626 kb on + strand, within MPMX19_03622at 1057.626 kb on + strand, within MPMX19_03622at 1057.626 kb on + strand, within MPMX19_03622at 1057.626 kb on + strand, within MPMX19_03622at 1057.626 kb on + strand, within MPMX19_03622at 1057.626 kb on + strand, within MPMX19_03622at 1057.626 kb on + strand, within MPMX19_03622at 1057.626 kb on + strand, within MPMX19_03622at 1057.626 kb on + strand, within MPMX19_03622at 1057.626 kb on + strand, within MPMX19_03622at 1057.626 kb on + strand, within MPMX19_03622at 1057.627 kb on - strand, within MPMX19_03622at 1057.627 kb on - strand, within MPMX19_03622at 1057.627 kb on - strand, within MPMX19_03622at 1057.627 kb on - strand, within MPMX19_03622at 1057.627 kb on - strand, within MPMX19_03622at 1057.627 kb on - strand, within MPMX19_03622at 1057.627 kb on - strand, within MPMX19_03622at 1057.627 kb on - strand, within MPMX19_03622at 1057.627 kb on - strand, within MPMX19_03622at 1057.627 kb on - strand, within MPMX19_03622at 1057.627 kb on - strand, within MPMX19_03622at 1057.627 kb on - strand, within MPMX19_03622at 1057.674 kb on - strand, within MPMX19_03622at 1058.212 kb on + strand, within MPMX19_03623at 1058.213 kb on - strand, within MPMX19_03623at 1058.313 kb on + strand, within MPMX19_03623at 1058.314 kb on - strand, within MPMX19_03623at 1058.341 kb on + strand, within MPMX19_03623at 1058.342 kb on - strand, within MPMX19_03623at 1058.353 kb on + strand, within MPMX19_03623at 1058.353 kb on + strand, within MPMX19_03623at 1058.353 kb on + strand, within MPMX19_03623at 1058.353 kb on + strand, within MPMX19_03623at 1058.354 kb on - strand, within MPMX19_03623at 1058.354 kb on - strand, within MPMX19_03623at 1058.356 kb on + strand, within MPMX19_03623at 1058.357 kb on - strand, within MPMX19_03623at 1058.357 kb on - strand, within MPMX19_03623at 1058.357 kb on - strand, within MPMX19_03623at 1058.357 kb on - strand, within MPMX19_03623at 1058.452 kb on + strand, within MPMX19_03623at 1058.452 kb on + strand, within MPMX19_03623at 1058.452 kb on + strand, within MPMX19_03623at 1058.453 kb on - strand, within MPMX19_03623at 1058.453 kb on - strand, within MPMX19_03623at 1058.453 kb on - strand, within MPMX19_03623at 1058.453 kb on - strand, within MPMX19_03623at 1058.453 kb on - strand, within MPMX19_03623at 1058.453 kb on - strand, within MPMX19_03623at 1058.453 kb on - strand, within MPMX19_03623at 1058.453 kb on - strand, within MPMX19_03623at 1058.453 kb on - strand, within MPMX19_03623at 1058.453 kb on - strand, within MPMX19_03623at 1058.530 kb on + strand, within MPMX19_03623at 1058.530 kb on + strand, within MPMX19_03623at 1058.530 kb on + strand, within MPMX19_03623at 1058.530 kb on + strand, within MPMX19_03623at 1058.530 kb on + strand, within MPMX19_03623at 1058.531 kb on - strand, within MPMX19_03623at 1058.531 kb on - strand, within MPMX19_03623at 1058.531 kb on - strand, within MPMX19_03623at 1058.531 kb on - strand, within MPMX19_03623at 1058.531 kb on - strand, within MPMX19_03623at 1058.572 kb on + strand, within MPMX19_03623at 1058.572 kb on + strand, within MPMX19_03623at 1058.572 kb on + strand, within MPMX19_03623at 1058.572 kb on + strand, within MPMX19_03623at 1058.572 kb on + strand, within MPMX19_03623at 1058.572 kb on + strand, within MPMX19_03623at 1058.572 kb on + strand, within MPMX19_03623at 1058.572 kb on + strand, within MPMX19_03623at 1058.572 kb on + strand, within MPMX19_03623at 1058.572 kb on + strand, within MPMX19_03623at 1058.572 kb on + strand, within MPMX19_03623at 1058.572 kb on + strand, within MPMX19_03623at 1058.572 kb on + strand, within MPMX19_03623at 1058.572 kb on + strand, within MPMX19_03623at 1058.572 kb on + strand, within MPMX19_03623at 1058.572 kb on + strand, within MPMX19_03623at 1058.572 kb on + strand, within MPMX19_03623at 1058.572 kb on + strand, within MPMX19_03623at 1058.573 kb on - strand, within MPMX19_03623at 1058.573 kb on - strand, within MPMX19_03623at 1058.573 kb on - strand, within MPMX19_03623at 1058.573 kb on - strand, within MPMX19_03623at 1058.573 kb on - strand, within MPMX19_03623at 1058.573 kb on - strand, within MPMX19_03623at 1058.573 kb on - strand, within MPMX19_03623at 1058.573 kb on - strand, within MPMX19_03623at 1058.573 kb on - strand, within MPMX19_03623at 1058.573 kb on - strand, within MPMX19_03623at 1058.573 kb on - strand, within MPMX19_03623at 1058.761 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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1,055,356 + MPMX19_03621 0.42 -1.9
1,055,356 + MPMX19_03621 0.42 -0.4
1,055,356 + MPMX19_03621 0.42 -0.5
1,055,357 - MPMX19_03621 0.42 +0.2
1,055,357 - MPMX19_03621 0.42 +0.8
1,055,357 - MPMX19_03621 0.42 +0.6
1,055,357 - MPMX19_03621 0.42 +0.3
1,055,357 - MPMX19_03621 0.42 -0.6
1,055,357 - MPMX19_03621 0.42 -0.5
1,055,357 - MPMX19_03621 0.42 +1.1
1,055,357 - MPMX19_03621 0.42 +0.6
1,055,357 - MPMX19_03621 0.42 +0.4
1,055,357 - MPMX19_03621 0.42 -1.0
1,055,394 + MPMX19_03621 0.45 -1.6
1,055,395 - MPMX19_03621 0.45 -0.7
1,055,538 + MPMX19_03621 0.56 +0.0
1,055,538 + MPMX19_03621 0.56 -0.6
1,055,538 + MPMX19_03621 0.56 -0.1
1,055,538 + MPMX19_03621 0.56 -0.2
1,055,538 + MPMX19_03621 0.56 +0.4
1,055,538 + MPMX19_03621 0.56 +0.3
1,055,539 - MPMX19_03621 0.57 -1.4
1,055,539 - MPMX19_03621 0.57 -1.4
1,055,539 - MPMX19_03621 0.57 +1.2
1,055,539 - MPMX19_03621 0.57 -0.4
1,055,539 - MPMX19_03621 0.57 +0.3
1,055,539 - MPMX19_03621 0.57 +1.5
1,055,539 - MPMX19_03621 0.57 +1.1
1,055,565 + MPMX19_03621 0.59 -1.3
1,056,182 - -0.6
1,056,182 - -2.3
1,056,379 + +0.6
1,056,380 - +0.9
1,056,380 - +1.5
1,056,487 - MPMX19_03622 0.10 +0.1
1,056,912 + MPMX19_03622 0.38 -1.7
1,056,912 + MPMX19_03622 0.38 +1.8
1,056,912 + MPMX19_03622 0.38 +0.5
1,056,912 + MPMX19_03622 0.38 +1.6
1,056,912 + MPMX19_03622 0.38 -1.3
1,056,912 + MPMX19_03622 0.38 +1.3
1,056,912 + MPMX19_03622 0.38 -2.5
1,056,912 + MPMX19_03622 0.38 -0.0
1,056,912 + MPMX19_03622 0.38 +0.2
1,056,912 + MPMX19_03622 0.38 -0.7
1,056,912 + MPMX19_03622 0.38 +0.1
1,056,912 + MPMX19_03622 0.38 +1.8
1,056,912 + MPMX19_03622 0.38 -1.3
1,056,913 - MPMX19_03622 0.38 -0.0
1,056,913 - MPMX19_03622 0.38 -1.3
1,056,913 - MPMX19_03622 0.38 +0.2
1,056,913 - MPMX19_03622 0.38 -0.4
1,056,913 - MPMX19_03622 0.38 -0.8
1,056,913 - MPMX19_03622 0.38 +0.0
1,056,913 - MPMX19_03622 0.38 -0.2
1,056,913 - MPMX19_03622 0.38 -0.7
1,056,913 - MPMX19_03622 0.38 +0.7
1,056,913 - MPMX19_03622 0.38 +0.1
1,056,913 - MPMX19_03622 0.38 -2.2
1,056,913 - MPMX19_03622 0.38 -0.8
1,056,913 - MPMX19_03622 0.38 +0.3
1,056,913 - MPMX19_03622 0.38 -1.9
1,056,913 - MPMX19_03622 0.38 -0.9
1,056,913 - MPMX19_03622 0.38 +0.8
1,056,913 - MPMX19_03622 0.38 -0.4
1,057,323 + MPMX19_03622 0.66 +0.3
1,057,323 + MPMX19_03622 0.66 +0.1
1,057,323 + MPMX19_03622 0.66 +0.3
1,057,323 + MPMX19_03622 0.66 +1.3
1,057,323 + MPMX19_03622 0.66 -0.1
1,057,324 - MPMX19_03622 0.66 -0.7
1,057,324 - MPMX19_03622 0.66 +0.8
1,057,324 - MPMX19_03622 0.66 +0.7
1,057,626 + MPMX19_03622 0.86 +0.4
1,057,626 + MPMX19_03622 0.86 -1.3
1,057,626 + MPMX19_03622 0.86 +0.1
1,057,626 + MPMX19_03622 0.86 -1.3
1,057,626 + MPMX19_03622 0.86 -1.4
1,057,626 + MPMX19_03622 0.86 -1.2
1,057,626 + MPMX19_03622 0.86 -0.6
1,057,626 + MPMX19_03622 0.86 +0.8
1,057,626 + MPMX19_03622 0.86 -2.6
1,057,626 + MPMX19_03622 0.86 -0.0
1,057,626 + MPMX19_03622 0.86 -0.4
1,057,626 + MPMX19_03622 0.86 -0.7
1,057,626 + MPMX19_03622 0.86 +1.4
1,057,626 + MPMX19_03622 0.86 +0.4
1,057,626 + MPMX19_03622 0.86 +0.7
1,057,626 + MPMX19_03622 0.86 +0.1
1,057,626 + MPMX19_03622 0.86 +0.6
1,057,626 + MPMX19_03622 0.86 -0.5
1,057,626 + MPMX19_03622 0.86 +1.1
1,057,627 - MPMX19_03622 0.86 -0.6
1,057,627 - MPMX19_03622 0.86 +1.1
1,057,627 - MPMX19_03622 0.86 +0.4
1,057,627 - MPMX19_03622 0.86 -0.4
1,057,627 - MPMX19_03622 0.86 +1.0
1,057,627 - MPMX19_03622 0.86 +0.3
1,057,627 - MPMX19_03622 0.86 +0.5
1,057,627 - MPMX19_03622 0.86 +0.4
1,057,627 - MPMX19_03622 0.86 +0.4
1,057,627 - MPMX19_03622 0.86 -1.3
1,057,627 - MPMX19_03622 0.86 +0.8
1,057,627 - MPMX19_03622 0.86 -2.2
1,057,674 - MPMX19_03622 0.89 -1.5
1,058,212 + MPMX19_03623 0.40 +1.3
1,058,213 - MPMX19_03623 0.41 +0.7
1,058,313 + MPMX19_03623 0.50 +0.6
1,058,314 - MPMX19_03623 0.50 +1.0
1,058,341 + MPMX19_03623 0.53 -0.3
1,058,342 - MPMX19_03623 0.53 +0.5
1,058,353 + MPMX19_03623 0.54 -1.0
1,058,353 + MPMX19_03623 0.54 -0.7
1,058,353 + MPMX19_03623 0.54 -0.5
1,058,353 + MPMX19_03623 0.54 +2.0
1,058,354 - MPMX19_03623 0.54 -2.8
1,058,354 - MPMX19_03623 0.54 +1.0
1,058,356 + MPMX19_03623 0.54 -1.0
1,058,357 - MPMX19_03623 0.54 +1.5
1,058,357 - MPMX19_03623 0.54 +0.6
1,058,357 - MPMX19_03623 0.54 +0.5
1,058,357 - MPMX19_03623 0.54 -0.7
1,058,452 + MPMX19_03623 0.64 -1.4
1,058,452 + MPMX19_03623 0.64 +1.4
1,058,452 + MPMX19_03623 0.64 +0.3
1,058,453 - MPMX19_03623 0.64 +0.4
1,058,453 - MPMX19_03623 0.64 -1.6
1,058,453 - MPMX19_03623 0.64 +0.8
1,058,453 - MPMX19_03623 0.64 -0.4
1,058,453 - MPMX19_03623 0.64 +0.1
1,058,453 - MPMX19_03623 0.64 -2.2
1,058,453 - MPMX19_03623 0.64 +0.3
1,058,453 - MPMX19_03623 0.64 -2.0
1,058,453 - MPMX19_03623 0.64 +0.8
1,058,453 - MPMX19_03623 0.64 +0.4
1,058,530 + MPMX19_03623 0.71 -1.3
1,058,530 + MPMX19_03623 0.71 +0.2
1,058,530 + MPMX19_03623 0.71 +0.0
1,058,530 + MPMX19_03623 0.71 +0.1
1,058,530 + MPMX19_03623 0.71 -1.1
1,058,531 - MPMX19_03623 0.71 -1.5
1,058,531 - MPMX19_03623 0.71 +0.0
1,058,531 - MPMX19_03623 0.71 +0.2
1,058,531 - MPMX19_03623 0.71 +0.5
1,058,531 - MPMX19_03623 0.71 -0.4
1,058,572 + MPMX19_03623 0.75 +0.0
1,058,572 + MPMX19_03623 0.75 +0.2
1,058,572 + MPMX19_03623 0.75 +1.7
1,058,572 + MPMX19_03623 0.75 +0.5
1,058,572 + MPMX19_03623 0.75 -1.9
1,058,572 + MPMX19_03623 0.75 +0.9
1,058,572 + MPMX19_03623 0.75 +0.5
1,058,572 + MPMX19_03623 0.75 +0.1
1,058,572 + MPMX19_03623 0.75 -0.5
1,058,572 + MPMX19_03623 0.75 -0.0
1,058,572 + MPMX19_03623 0.75 -1.5
1,058,572 + MPMX19_03623 0.75 +0.3
1,058,572 + MPMX19_03623 0.75 +0.1
1,058,572 + MPMX19_03623 0.75 +1.0
1,058,572 + MPMX19_03623 0.75 +0.7
1,058,572 + MPMX19_03623 0.75 +0.2
1,058,572 + MPMX19_03623 0.75 -1.5
1,058,572 + MPMX19_03623 0.75 -0.1
1,058,573 - MPMX19_03623 0.75 -0.2
1,058,573 - MPMX19_03623 0.75 -1.0
1,058,573 - MPMX19_03623 0.75 -1.5
1,058,573 - MPMX19_03623 0.75 -0.8
1,058,573 - MPMX19_03623 0.75 +0.8
1,058,573 - MPMX19_03623 0.75 -0.4
1,058,573 - MPMX19_03623 0.75 -2.3
1,058,573 - MPMX19_03623 0.75 -0.3
1,058,573 - MPMX19_03623 0.75 +0.5
1,058,573 - MPMX19_03623 0.75 -1.5
1,058,573 - MPMX19_03623 0.75 -1.0
1,058,761 + -1.9

Or see this region's nucleotide sequence