Experiment: NL-CCM; spin-x control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02737 and MPMX19_02738 are separated by 155 nucleotides MPMX19_02738 and MPMX19_02739 are separated by 52 nucleotides
MPMX19_02736: MPMX19_02736 - Tryptophan synthase beta chain, at 2,880,445 to 2,881,662
_02736
MPMX19_02737: MPMX19_02737 - Tryptophan synthase alpha chain, at 2,881,659 to 2,882,504
_02737
MPMX19_02738: MPMX19_02738 - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic, at 2,882,660 to 2,883,706
_02738
MPMX19_02739: MPMX19_02739 - Dihydrofolate synthase/folylpolyglutamate synthase, at 2,883,759 to 2,885,129
_02739
Position (kb)
2882
2883
2884 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2881.983 kb on + strand, within MPMX19_02737 at 2881.983 kb on + strand, within MPMX19_02737 at 2881.983 kb on + strand, within MPMX19_02737 at 2881.984 kb on - strand, within MPMX19_02737 at 2882.004 kb on + strand, within MPMX19_02737 at 2882.005 kb on - strand, within MPMX19_02737 at 2882.005 kb on - strand, within MPMX19_02737 at 2882.005 kb on - strand, within MPMX19_02737 at 2882.202 kb on + strand, within MPMX19_02737 at 2882.202 kb on + strand, within MPMX19_02737 at 2882.202 kb on + strand, within MPMX19_02737 at 2882.203 kb on - strand, within MPMX19_02737 at 2882.205 kb on + strand, within MPMX19_02737 at 2882.205 kb on + strand, within MPMX19_02737 at 2882.205 kb on + strand, within MPMX19_02737 at 2882.205 kb on + strand, within MPMX19_02737 at 2882.205 kb on + strand, within MPMX19_02737 at 2882.205 kb on + strand, within MPMX19_02737 at 2882.205 kb on + strand, within MPMX19_02737 at 2882.205 kb on + strand, within MPMX19_02737 at 2882.205 kb on + strand, within MPMX19_02737 at 2882.205 kb on + strand, within MPMX19_02737 at 2882.206 kb on - strand, within MPMX19_02737 at 2882.206 kb on - strand, within MPMX19_02737 at 2882.206 kb on - strand, within MPMX19_02737 at 2882.206 kb on - strand, within MPMX19_02737 at 2882.206 kb on - strand, within MPMX19_02737 at 2882.206 kb on - strand, within MPMX19_02737 at 2882.206 kb on - strand, within MPMX19_02737 at 2882.206 kb on - strand, within MPMX19_02737 at 2882.206 kb on - strand, within MPMX19_02737 at 2882.206 kb on - strand, within MPMX19_02737 at 2882.518 kb on + strand at 2882.518 kb on + strand at 2882.518 kb on + strand at 2882.539 kb on + strand at 2882.539 kb on + strand at 2882.539 kb on + strand at 2882.539 kb on + strand at 2882.539 kb on + strand at 2882.539 kb on + strand at 2882.539 kb on + strand at 2883.714 kb on + strand at 2883.714 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; spin-x control remove 2,881,983 + MPMX19_02737 0.38 -1.2 2,881,983 + MPMX19_02737 0.38 -0.4 2,881,983 + MPMX19_02737 0.38 -2.0 2,881,984 - MPMX19_02737 0.38 -0.7 2,882,004 + MPMX19_02737 0.41 -0.9 2,882,005 - MPMX19_02737 0.41 -1.3 2,882,005 - MPMX19_02737 0.41 -1.6 2,882,005 - MPMX19_02737 0.41 -3.2 2,882,202 + MPMX19_02737 0.64 -2.4 2,882,202 + MPMX19_02737 0.64 -0.2 2,882,202 + MPMX19_02737 0.64 -1.0 2,882,203 - MPMX19_02737 0.64 -1.0 2,882,205 + MPMX19_02737 0.65 +0.4 2,882,205 + MPMX19_02737 0.65 -1.5 2,882,205 + MPMX19_02737 0.65 -2.3 2,882,205 + MPMX19_02737 0.65 -0.3 2,882,205 + MPMX19_02737 0.65 -2.4 2,882,205 + MPMX19_02737 0.65 -1.9 2,882,205 + MPMX19_02737 0.65 -2.9 2,882,205 + MPMX19_02737 0.65 -1.6 2,882,205 + MPMX19_02737 0.65 -0.5 2,882,205 + MPMX19_02737 0.65 -1.2 2,882,206 - MPMX19_02737 0.65 -1.7 2,882,206 - MPMX19_02737 0.65 +0.4 2,882,206 - MPMX19_02737 0.65 -1.2 2,882,206 - MPMX19_02737 0.65 +0.4 2,882,206 - MPMX19_02737 0.65 -2.4 2,882,206 - MPMX19_02737 0.65 -1.4 2,882,206 - MPMX19_02737 0.65 -2.0 2,882,206 - MPMX19_02737 0.65 -2.3 2,882,206 - MPMX19_02737 0.65 -2.0 2,882,206 - MPMX19_02737 0.65 +0.6 2,882,518 + +0.5 2,882,518 + -1.4 2,882,518 + -1.4 2,882,539 + -1.6 2,882,539 + -0.9 2,882,539 + -0.3 2,882,539 + -0.2 2,882,539 + -0.2 2,882,539 + -1.2 2,882,539 + -1.2 2,883,714 + +0.6 2,883,714 + +0.3
Or see this region's nucleotide sequence