Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01001

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00999 and MPMX19_01000 overlap by 4 nucleotidesMPMX19_01000 and MPMX19_01001 are separated by 12 nucleotidesMPMX19_01001 and MPMX19_01002 overlap by 4 nucleotides MPMX19_00999: MPMX19_00999 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ, at 1,040,967 to 1,041,449 _00999 MPMX19_01000: MPMX19_01000 - Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase, at 1,041,446 to 1,042,240 _01000 MPMX19_01001: MPMX19_01001 - UDP-2,3-diacylglucosamine pyrophosphatase LpxI, at 1,042,253 to 1,043,110 _01001 MPMX19_01002: MPMX19_01002 - Lipid-A-disaccharide synthase, at 1,043,107 to 1,044,339 _01002 Position (kb) 1042 1043 1044Strain fitness (log2 ratio) -1 0 1at 1042.261 kb on + strandat 1042.264 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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1,042,261 + +0.4
1,042,264 + +0.1

Or see this region's nucleotide sequence