Experiment: NL-CCM; spin-x control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00951 and MPMX19_00952 overlap by 49 nucleotides MPMX19_00952 and MPMX19_00953 are separated by 79 nucleotides MPMX19_00953 and MPMX19_00954 are separated by 213 nucleotides
MPMX19_00951: MPMX19_00951 - ATP-dependent DNA helicase RecG, at 990,342 to 992,489
_00951
MPMX19_00952: MPMX19_00952 - hypothetical protein, at 992,441 to 993,295
_00952
MPMX19_00953: MPMX19_00953 - hypothetical protein, at 993,375 to 993,776
_00953
MPMX19_00954: MPMX19_00954 - Cyclic AMP receptor protein, at 993,990 to 994,724
_00954
Position (kb) 992
993
994 Strain fitness (log2 ratio) -2
-1
0
1
2 at 992.443 kb on - strand at 992.649 kb on + strand, within MPMX19_00952 at 992.650 kb on - strand, within MPMX19_00952 at 992.650 kb on - strand, within MPMX19_00952 at 992.781 kb on + strand, within MPMX19_00952 at 992.782 kb on - strand, within MPMX19_00952 at 992.859 kb on + strand, within MPMX19_00952 at 992.859 kb on + strand, within MPMX19_00952 at 992.859 kb on + strand, within MPMX19_00952 at 992.860 kb on - strand, within MPMX19_00952 at 992.860 kb on - strand, within MPMX19_00952 at 992.860 kb on - strand, within MPMX19_00952 at 992.860 kb on - strand, within MPMX19_00952 at 992.860 kb on - strand, within MPMX19_00952 at 992.860 kb on - strand, within MPMX19_00952 at 992.860 kb on - strand, within MPMX19_00952 at 992.860 kb on - strand, within MPMX19_00952 at 992.860 kb on - strand, within MPMX19_00952 at 992.860 kb on - strand, within MPMX19_00952 at 992.928 kb on + strand, within MPMX19_00952 at 992.928 kb on + strand, within MPMX19_00952 at 992.928 kb on + strand, within MPMX19_00952 at 992.928 kb on + strand, within MPMX19_00952 at 992.928 kb on + strand, within MPMX19_00952 at 992.928 kb on + strand, within MPMX19_00952 at 992.928 kb on + strand, within MPMX19_00952 at 992.929 kb on - strand, within MPMX19_00952 at 992.929 kb on - strand, within MPMX19_00952 at 992.929 kb on - strand, within MPMX19_00952 at 992.929 kb on - strand, within MPMX19_00952 at 993.009 kb on + strand, within MPMX19_00952 at 993.009 kb on + strand, within MPMX19_00952 at 993.009 kb on + strand, within MPMX19_00952 at 993.009 kb on + strand, within MPMX19_00952 at 993.009 kb on + strand, within MPMX19_00952 at 993.010 kb on - strand, within MPMX19_00952 at 993.010 kb on - strand, within MPMX19_00952 at 993.010 kb on - strand, within MPMX19_00952 at 993.010 kb on - strand, within MPMX19_00952 at 993.024 kb on + strand, within MPMX19_00952 at 993.024 kb on + strand, within MPMX19_00952 at 993.024 kb on + strand, within MPMX19_00952 at 993.024 kb on + strand, within MPMX19_00952 at 993.024 kb on + strand, within MPMX19_00952 at 993.025 kb on - strand, within MPMX19_00952 at 993.025 kb on - strand, within MPMX19_00952 at 993.025 kb on - strand, within MPMX19_00952 at 993.025 kb on - strand, within MPMX19_00952 at 993.050 kb on - strand, within MPMX19_00952 at 993.050 kb on - strand, within MPMX19_00952 at 993.051 kb on + strand, within MPMX19_00952 at 993.051 kb on + strand, within MPMX19_00952 at 993.051 kb on + strand, within MPMX19_00952 at 993.051 kb on + strand, within MPMX19_00952 at 993.052 kb on - strand, within MPMX19_00952 at 993.052 kb on - strand, within MPMX19_00952 at 993.052 kb on - strand, within MPMX19_00952 at 993.052 kb on - strand, within MPMX19_00952 at 993.052 kb on - strand, within MPMX19_00952 at 993.052 kb on - strand, within MPMX19_00952 at 993.052 kb on - strand, within MPMX19_00952 at 993.052 kb on - strand, within MPMX19_00952 at 993.086 kb on - strand, within MPMX19_00952 at 993.086 kb on - strand, within MPMX19_00952 at 993.086 kb on - strand, within MPMX19_00952 at 993.087 kb on + strand, within MPMX19_00952 at 993.087 kb on + strand, within MPMX19_00952 at 993.087 kb on + strand, within MPMX19_00952 at 993.087 kb on + strand, within MPMX19_00952 at 993.087 kb on + strand, within MPMX19_00952 at 993.087 kb on + strand, within MPMX19_00952 at 993.087 kb on + strand, within MPMX19_00952 at 993.087 kb on + strand, within MPMX19_00952 at 993.087 kb on + strand, within MPMX19_00952 at 993.087 kb on + strand, within MPMX19_00952 at 993.087 kb on + strand, within MPMX19_00952 at 993.087 kb on + strand, within MPMX19_00952 at 993.087 kb on + strand, within MPMX19_00952 at 993.087 kb on + strand, within MPMX19_00952 at 993.087 kb on + strand, within MPMX19_00952 at 993.087 kb on + strand, within MPMX19_00952 at 993.087 kb on + strand, within MPMX19_00952 at 993.087 kb on + strand, within MPMX19_00952 at 993.088 kb on - strand, within MPMX19_00952 at 993.088 kb on - strand, within MPMX19_00952 at 993.088 kb on - strand, within MPMX19_00952 at 993.088 kb on - strand, within MPMX19_00952 at 993.088 kb on - strand, within MPMX19_00952 at 993.088 kb on - strand, within MPMX19_00952 at 993.088 kb on - strand, within MPMX19_00952 at 993.088 kb on - strand, within MPMX19_00952 at 993.088 kb on - strand, within MPMX19_00952 at 993.088 kb on - strand, within MPMX19_00952 at 993.135 kb on + strand, within MPMX19_00952 at 993.135 kb on + strand, within MPMX19_00952 at 993.135 kb on + strand, within MPMX19_00952 at 993.136 kb on - strand, within MPMX19_00952 at 993.136 kb on - strand, within MPMX19_00952 at 993.136 kb on - strand, within MPMX19_00952 at 993.197 kb on - strand, within MPMX19_00952 at 993.311 kb on + strand at 993.311 kb on + strand at 993.311 kb on + strand at 993.312 kb on - strand at 993.312 kb on - strand at 993.347 kb on + strand at 993.499 kb on + strand, within MPMX19_00953 at 993.499 kb on + strand, within MPMX19_00953 at 993.499 kb on + strand, within MPMX19_00953 at 993.499 kb on + strand, within MPMX19_00953 at 993.499 kb on + strand, within MPMX19_00953 at 993.499 kb on + strand, within MPMX19_00953 at 993.499 kb on + strand, within MPMX19_00953 at 993.500 kb on - strand, within MPMX19_00953 at 993.500 kb on - strand, within MPMX19_00953 at 993.500 kb on - strand, within MPMX19_00953 at 993.500 kb on - strand, within MPMX19_00953 at 993.500 kb on - strand, within MPMX19_00953 at 993.500 kb on - strand, within MPMX19_00953 at 993.500 kb on - strand, within MPMX19_00953 at 993.500 kb on - strand, within MPMX19_00953 at 993.500 kb on - strand, within MPMX19_00953 at 993.500 kb on - strand, within MPMX19_00953 at 993.586 kb on + strand, within MPMX19_00953 at 993.586 kb on + strand, within MPMX19_00953 at 993.586 kb on + strand, within MPMX19_00953 at 993.586 kb on + strand, within MPMX19_00953 at 993.587 kb on - strand, within MPMX19_00953 at 993.587 kb on - strand, within MPMX19_00953 at 993.879 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.934 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; spin-x control remove 992,443 - -1.6 992,649 + MPMX19_00952 0.24 -1.5 992,650 - MPMX19_00952 0.24 -0.4 992,650 - MPMX19_00952 0.24 +0.6 992,781 + MPMX19_00952 0.40 -0.1 992,782 - MPMX19_00952 0.40 -0.4 992,859 + MPMX19_00952 0.49 -0.6 992,859 + MPMX19_00952 0.49 -0.3 992,859 + MPMX19_00952 0.49 +0.5 992,860 - MPMX19_00952 0.49 -0.1 992,860 - MPMX19_00952 0.49 -0.4 992,860 - MPMX19_00952 0.49 +0.8 992,860 - MPMX19_00952 0.49 -1.0 992,860 - MPMX19_00952 0.49 +0.3 992,860 - MPMX19_00952 0.49 +0.2 992,860 - MPMX19_00952 0.49 -1.4 992,860 - MPMX19_00952 0.49 -1.8 992,860 - MPMX19_00952 0.49 -1.1 992,860 - MPMX19_00952 0.49 +1.2 992,928 + MPMX19_00952 0.57 -0.3 992,928 + MPMX19_00952 0.57 +0.7 992,928 + MPMX19_00952 0.57 +1.2 992,928 + MPMX19_00952 0.57 -1.1 992,928 + MPMX19_00952 0.57 -1.0 992,928 + MPMX19_00952 0.57 +1.6 992,928 + MPMX19_00952 0.57 -1.4 992,929 - MPMX19_00952 0.57 -1.4 992,929 - MPMX19_00952 0.57 +0.9 992,929 - MPMX19_00952 0.57 +0.7 992,929 - MPMX19_00952 0.57 +0.7 993,009 + MPMX19_00952 0.66 -0.8 993,009 + MPMX19_00952 0.66 +0.4 993,009 + MPMX19_00952 0.66 +1.8 993,009 + MPMX19_00952 0.66 -0.8 993,009 + MPMX19_00952 0.66 -1.8 993,010 - MPMX19_00952 0.67 -0.1 993,010 - MPMX19_00952 0.67 +1.0 993,010 - MPMX19_00952 0.67 +0.6 993,010 - MPMX19_00952 0.67 -1.8 993,024 + MPMX19_00952 0.68 -0.4 993,024 + MPMX19_00952 0.68 +0.3 993,024 + MPMX19_00952 0.68 -0.2 993,024 + MPMX19_00952 0.68 -0.4 993,024 + MPMX19_00952 0.68 +0.0 993,025 - MPMX19_00952 0.68 -0.0 993,025 - MPMX19_00952 0.68 -0.2 993,025 - MPMX19_00952 0.68 -0.3 993,025 - MPMX19_00952 0.68 -1.5 993,050 - MPMX19_00952 0.71 +0.2 993,050 - MPMX19_00952 0.71 -0.4 993,051 + MPMX19_00952 0.71 -0.6 993,051 + MPMX19_00952 0.71 -0.4 993,051 + MPMX19_00952 0.71 -0.8 993,051 + MPMX19_00952 0.71 +1.1 993,052 - MPMX19_00952 0.71 -0.6 993,052 - MPMX19_00952 0.71 -0.5 993,052 - MPMX19_00952 0.71 -2.1 993,052 - MPMX19_00952 0.71 -0.8 993,052 - MPMX19_00952 0.71 -0.1 993,052 - MPMX19_00952 0.71 +0.2 993,052 - MPMX19_00952 0.71 +0.5 993,052 - MPMX19_00952 0.71 +0.2 993,086 - MPMX19_00952 0.75 +0.9 993,086 - MPMX19_00952 0.75 -0.1 993,086 - MPMX19_00952 0.75 -1.6 993,087 + MPMX19_00952 0.76 +1.0 993,087 + MPMX19_00952 0.76 +0.5 993,087 + MPMX19_00952 0.76 -0.6 993,087 + MPMX19_00952 0.76 +0.8 993,087 + MPMX19_00952 0.76 +0.2 993,087 + MPMX19_00952 0.76 -1.4 993,087 + MPMX19_00952 0.76 -2.0 993,087 + MPMX19_00952 0.76 +0.5 993,087 + MPMX19_00952 0.76 -0.0 993,087 + MPMX19_00952 0.76 -0.0 993,087 + MPMX19_00952 0.76 +0.4 993,087 + MPMX19_00952 0.76 -2.0 993,087 + MPMX19_00952 0.76 +0.0 993,087 + MPMX19_00952 0.76 +1.0 993,087 + MPMX19_00952 0.76 +0.4 993,087 + MPMX19_00952 0.76 +1.1 993,087 + MPMX19_00952 0.76 -1.0 993,087 + MPMX19_00952 0.76 +0.2 993,088 - MPMX19_00952 0.76 -1.6 993,088 - MPMX19_00952 0.76 +0.4 993,088 - MPMX19_00952 0.76 +0.4 993,088 - MPMX19_00952 0.76 -0.6 993,088 - MPMX19_00952 0.76 -0.3 993,088 - MPMX19_00952 0.76 +0.2 993,088 - MPMX19_00952 0.76 +0.4 993,088 - MPMX19_00952 0.76 -0.4 993,088 - MPMX19_00952 0.76 +2.2 993,088 - MPMX19_00952 0.76 -0.5 993,135 + MPMX19_00952 0.81 -0.6 993,135 + MPMX19_00952 0.81 +1.2 993,135 + MPMX19_00952 0.81 -0.9 993,136 - MPMX19_00952 0.81 -0.1 993,136 - MPMX19_00952 0.81 +1.2 993,136 - MPMX19_00952 0.81 +2.2 993,197 - MPMX19_00952 0.88 -1.0 993,311 + -0.6 993,311 + -0.4 993,311 + -0.0 993,312 - +0.8 993,312 - -0.4 993,347 + -0.2 993,499 + MPMX19_00953 0.31 -0.2 993,499 + MPMX19_00953 0.31 +0.6 993,499 + MPMX19_00953 0.31 +0.7 993,499 + MPMX19_00953 0.31 -1.1 993,499 + MPMX19_00953 0.31 -2.0 993,499 + MPMX19_00953 0.31 -0.3 993,499 + MPMX19_00953 0.31 -0.4 993,500 - MPMX19_00953 0.31 +0.2 993,500 - MPMX19_00953 0.31 -2.6 993,500 - MPMX19_00953 0.31 -0.1 993,500 - MPMX19_00953 0.31 -1.3 993,500 - MPMX19_00953 0.31 -0.6 993,500 - MPMX19_00953 0.31 -1.1 993,500 - MPMX19_00953 0.31 -0.5 993,500 - MPMX19_00953 0.31 -1.6 993,500 - MPMX19_00953 0.31 -1.6 993,500 - MPMX19_00953 0.31 -0.5 993,586 + MPMX19_00953 0.52 -1.5 993,586 + MPMX19_00953 0.52 +0.4 993,586 + MPMX19_00953 0.52 +0.4 993,586 + MPMX19_00953 0.52 -0.6 993,587 - MPMX19_00953 0.53 -0.4 993,587 - MPMX19_00953 0.53 +0.3 993,879 + -0.9 993,932 + -0.7 993,932 + -0.7 993,932 + +0.7 993,932 + +0.8 993,932 + +0.6 993,932 + -0.6 993,932 + +0.1 993,932 + -0.2 993,932 + -0.8 993,932 + -1.8 993,932 + +0.2 993,932 + +0.3 993,932 + -2.1 993,932 + -0.6 993,932 + +0.1 993,932 + +0.7 993,932 + +0.1 993,932 + +0.1 993,932 + -0.2 993,932 + -1.7 993,932 + -0.2 993,932 + -1.1 993,932 + -1.3 993,932 + -2.1 993,933 - -0.9 993,933 - +0.2 993,933 - -1.1 993,933 - +0.8 993,933 - -0.8 993,933 - +1.2 993,933 - -0.1 993,933 - -0.1 993,933 - +0.2 993,933 - -1.2 993,933 - +0.2 993,933 - +0.5 993,933 - -0.5 993,933 - +0.5 993,933 - -1.8 993,933 - -0.8 993,933 - -1.6 993,933 - +0.4 993,933 - +0.2 993,933 - -0.4 993,933 - +1.4 993,933 - -0.5 993,933 - -0.9 993,933 - -0.4 993,933 - -0.7 993,933 - +0.4 993,933 - -1.3 993,933 - -0.5 993,933 - -0.6 993,934 - -0.5
Or see this region's nucleotide sequence