Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00857

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00856 and MPMX19_00857 are separated by 32 nucleotidesMPMX19_00857 and MPMX19_00858 are separated by 115 nucleotidesMPMX19_00858 and MPMX19_00859 overlap by 4 nucleotides MPMX19_00856: MPMX19_00856 - Low affinity potassium transport system protein kup, at 889,377 to 891,275 _00856 MPMX19_00857: MPMX19_00857 - hypothetical protein, at 891,308 to 891,436 _00857 MPMX19_00858: MPMX19_00858 - Flagellar biosynthetic protein FliP, at 891,552 to 892,340 _00858 MPMX19_00859: MPMX19_00859 - hypothetical protein, at 892,337 to 892,678 _00859 Position (kb) 891 892Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 890.416 kb on + strand, within MPMX19_00856at 890.416 kb on + strand, within MPMX19_00856at 890.416 kb on + strand, within MPMX19_00856at 890.416 kb on + strand, within MPMX19_00856at 890.416 kb on + strand, within MPMX19_00856at 890.417 kb on - strand, within MPMX19_00856at 890.417 kb on - strand, within MPMX19_00856at 890.473 kb on + strand, within MPMX19_00856at 890.473 kb on + strand, within MPMX19_00856at 890.473 kb on + strand, within MPMX19_00856at 890.473 kb on + strand, within MPMX19_00856at 890.474 kb on - strand, within MPMX19_00856at 890.474 kb on - strand, within MPMX19_00856at 890.474 kb on - strand, within MPMX19_00856at 890.474 kb on - strand, within MPMX19_00856at 890.474 kb on - strand, within MPMX19_00856at 890.474 kb on - strand, within MPMX19_00856at 890.474 kb on - strand, within MPMX19_00856at 890.474 kb on - strand, within MPMX19_00856at 890.474 kb on - strand, within MPMX19_00856at 890.474 kb on - strand, within MPMX19_00856at 890.554 kb on + strand, within MPMX19_00856at 890.554 kb on + strand, within MPMX19_00856at 890.554 kb on + strand, within MPMX19_00856at 890.554 kb on + strand, within MPMX19_00856at 890.554 kb on + strand, within MPMX19_00856at 890.555 kb on - strand, within MPMX19_00856at 890.555 kb on - strand, within MPMX19_00856at 890.644 kb on + strand, within MPMX19_00856at 890.644 kb on + strand, within MPMX19_00856at 890.644 kb on + strand, within MPMX19_00856at 890.645 kb on - strand, within MPMX19_00856at 890.645 kb on - strand, within MPMX19_00856at 890.645 kb on - strand, within MPMX19_00856at 890.908 kb on + strand, within MPMX19_00856at 891.052 kb on + strand, within MPMX19_00856at 891.052 kb on + strand, within MPMX19_00856at 891.052 kb on + strand, within MPMX19_00856at 891.052 kb on + strand, within MPMX19_00856at 891.052 kb on + strand, within MPMX19_00856at 891.052 kb on + strand, within MPMX19_00856at 891.052 kb on + strand, within MPMX19_00856at 891.052 kb on + strand, within MPMX19_00856at 891.052 kb on + strand, within MPMX19_00856at 891.052 kb on + strand, within MPMX19_00856at 891.052 kb on + strand, within MPMX19_00856at 891.052 kb on + strand, within MPMX19_00856at 891.052 kb on + strand, within MPMX19_00856at 891.052 kb on + strand, within MPMX19_00856at 891.053 kb on - strand, within MPMX19_00856at 891.053 kb on - strand, within MPMX19_00856at 891.053 kb on - strand, within MPMX19_00856at 891.053 kb on - strand, within MPMX19_00856at 891.053 kb on - strand, within MPMX19_00856at 891.053 kb on - strand, within MPMX19_00856at 891.053 kb on - strand, within MPMX19_00856at 891.053 kb on - strand, within MPMX19_00856at 891.053 kb on - strand, within MPMX19_00856at 891.087 kb on + strandat 891.088 kb on - strandat 891.166 kb on + strandat 891.166 kb on + strandat 891.167 kb on - strandat 891.266 kb on + strandat 891.267 kb on - strandat 891.426 kb on + strandat 891.427 kb on - strandat 891.427 kb on - strandat 891.427 kb on - strandat 891.449 kb on + strandat 891.449 kb on + strandat 891.449 kb on + strandat 891.450 kb on - strandat 891.450 kb on - strandat 891.450 kb on - strandat 891.450 kb on - strandat 891.450 kb on - strandat 891.450 kb on - strandat 891.450 kb on - strandat 891.450 kb on - strandat 891.450 kb on - strandat 891.450 kb on - strandat 891.450 kb on - strandat 891.450 kb on - strandat 891.450 kb on - strandat 891.596 kb on - strandat 891.596 kb on - strandat 891.596 kb on - strandat 891.967 kb on + strand, within MPMX19_00858at 891.967 kb on + strand, within MPMX19_00858at 891.967 kb on + strand, within MPMX19_00858at 891.967 kb on + strand, within MPMX19_00858at 891.967 kb on + strand, within MPMX19_00858at 891.967 kb on + strand, within MPMX19_00858at 891.967 kb on + strand, within MPMX19_00858at 891.967 kb on + strand, within MPMX19_00858at 891.967 kb on + strand, within MPMX19_00858at 891.967 kb on + strand, within MPMX19_00858at 891.967 kb on + strand, within MPMX19_00858at 891.967 kb on + strand, within MPMX19_00858at 891.968 kb on - strand, within MPMX19_00858at 891.968 kb on - strand, within MPMX19_00858at 891.968 kb on - strand, within MPMX19_00858at 891.968 kb on - strand, within MPMX19_00858at 891.968 kb on - strand, within MPMX19_00858at 891.968 kb on - strand, within MPMX19_00858at 891.968 kb on - strand, within MPMX19_00858at 891.968 kb on - strand, within MPMX19_00858at 891.968 kb on - strand, within MPMX19_00858at 891.968 kb on - strand, within MPMX19_00858at 891.968 kb on - strand, within MPMX19_00858

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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890,416 + MPMX19_00856 0.55 +0.4
890,416 + MPMX19_00856 0.55 +1.4
890,416 + MPMX19_00856 0.55 +0.2
890,416 + MPMX19_00856 0.55 +2.2
890,416 + MPMX19_00856 0.55 -0.6
890,417 - MPMX19_00856 0.55 +1.2
890,417 - MPMX19_00856 0.55 -0.9
890,473 + MPMX19_00856 0.58 -0.8
890,473 + MPMX19_00856 0.58 +0.5
890,473 + MPMX19_00856 0.58 +0.5
890,473 + MPMX19_00856 0.58 -0.6
890,474 - MPMX19_00856 0.58 +0.5
890,474 - MPMX19_00856 0.58 +0.2
890,474 - MPMX19_00856 0.58 -0.5
890,474 - MPMX19_00856 0.58 -1.1
890,474 - MPMX19_00856 0.58 -0.8
890,474 - MPMX19_00856 0.58 +0.7
890,474 - MPMX19_00856 0.58 -1.1
890,474 - MPMX19_00856 0.58 +0.9
890,474 - MPMX19_00856 0.58 -1.4
890,474 - MPMX19_00856 0.58 -0.9
890,554 + MPMX19_00856 0.62 +1.6
890,554 + MPMX19_00856 0.62 -1.9
890,554 + MPMX19_00856 0.62 +0.6
890,554 + MPMX19_00856 0.62 +1.0
890,554 + MPMX19_00856 0.62 -0.6
890,555 - MPMX19_00856 0.62 +1.2
890,555 - MPMX19_00856 0.62 -0.2
890,644 + MPMX19_00856 0.67 -0.0
890,644 + MPMX19_00856 0.67 +2.5
890,644 + MPMX19_00856 0.67 -0.0
890,645 - MPMX19_00856 0.67 +0.4
890,645 - MPMX19_00856 0.67 +0.8
890,645 - MPMX19_00856 0.67 -1.4
890,908 + MPMX19_00856 0.81 +1.2
891,052 + MPMX19_00856 0.88 -0.0
891,052 + MPMX19_00856 0.88 -1.1
891,052 + MPMX19_00856 0.88 -0.2
891,052 + MPMX19_00856 0.88 -0.6
891,052 + MPMX19_00856 0.88 -1.7
891,052 + MPMX19_00856 0.88 -0.6
891,052 + MPMX19_00856 0.88 +0.1
891,052 + MPMX19_00856 0.88 -0.4
891,052 + MPMX19_00856 0.88 -0.4
891,052 + MPMX19_00856 0.88 +1.2
891,052 + MPMX19_00856 0.88 +0.4
891,052 + MPMX19_00856 0.88 -0.8
891,052 + MPMX19_00856 0.88 -0.4
891,052 + MPMX19_00856 0.88 -1.9
891,053 - MPMX19_00856 0.88 +1.2
891,053 - MPMX19_00856 0.88 -2.1
891,053 - MPMX19_00856 0.88 -1.9
891,053 - MPMX19_00856 0.88 +1.2
891,053 - MPMX19_00856 0.88 -1.2
891,053 - MPMX19_00856 0.88 +0.6
891,053 - MPMX19_00856 0.88 -2.6
891,053 - MPMX19_00856 0.88 -0.1
891,053 - MPMX19_00856 0.88 +0.1
891,087 + -1.9
891,088 - -0.6
891,166 + +1.2
891,166 + -1.4
891,167 - +0.2
891,266 + -0.9
891,267 - +0.2
891,426 + -1.6
891,427 - +0.4
891,427 - -0.8
891,427 - +0.3
891,449 + -0.9
891,449 + +0.0
891,449 + +0.2
891,450 - +1.5
891,450 - +0.1
891,450 - +0.1
891,450 - +1.0
891,450 - -0.4
891,450 - -0.4
891,450 - +1.0
891,450 - -0.4
891,450 - +0.1
891,450 - +0.5
891,450 - +1.4
891,450 - +1.5
891,450 - -2.5
891,596 - -1.7
891,596 - +0.2
891,596 - +0.8
891,967 + MPMX19_00858 0.53 -1.9
891,967 + MPMX19_00858 0.53 -1.0
891,967 + MPMX19_00858 0.53 -0.9
891,967 + MPMX19_00858 0.53 -0.4
891,967 + MPMX19_00858 0.53 -2.2
891,967 + MPMX19_00858 0.53 -1.1
891,967 + MPMX19_00858 0.53 -0.9
891,967 + MPMX19_00858 0.53 -1.9
891,967 + MPMX19_00858 0.53 -2.7
891,967 + MPMX19_00858 0.53 -2.5
891,967 + MPMX19_00858 0.53 -2.6
891,967 + MPMX19_00858 0.53 -1.2
891,968 - MPMX19_00858 0.53 -2.4
891,968 - MPMX19_00858 0.53 -0.1
891,968 - MPMX19_00858 0.53 -0.6
891,968 - MPMX19_00858 0.53 -1.8
891,968 - MPMX19_00858 0.53 -0.2
891,968 - MPMX19_00858 0.53 +0.6
891,968 - MPMX19_00858 0.53 -2.2
891,968 - MPMX19_00858 0.53 -3.3
891,968 - MPMX19_00858 0.53 -1.5
891,968 - MPMX19_00858 0.53 -3.1
891,968 - MPMX19_00858 0.53 -0.8

Or see this region's nucleotide sequence