Experiment: NL-CCM; spin-x control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00090 and MPMX19_00091 are separated by 66 nucleotides MPMX19_00091 and MPMX19_00092 are separated by 159 nucleotides MPMX19_00092 and MPMX19_00093 are separated by 497 nucleotides MPMX19_00093 and MPMX19_00094 overlap by 17 nucleotides
MPMX19_00090: MPMX19_00090 - L-asparaginase 1, at 96,529 to 97,617
_00090
MPMX19_00091: MPMX19_00091 - hypothetical protein, at 97,684 to 98,298
_00091
MPMX19_00092: MPMX19_00092 - Elongation factor 4, at 98,458 to 100,260
_00092
MPMX19_00093: MPMX19_00093 - hypothetical protein, at 100,758 to 101,129
_00093
MPMX19_00094: MPMX19_00094 - hypothetical protein, at 101,113 to 101,391
_00094
Position (kb) 98
99
100
101 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 97.490 kb on - strand, within MPMX19_00090 at 97.490 kb on - strand, within MPMX19_00090 at 97.513 kb on + strand at 97.513 kb on + strand at 97.513 kb on + strand at 97.513 kb on + strand at 97.513 kb on + strand at 97.513 kb on + strand at 97.514 kb on - strand at 97.514 kb on - strand at 97.514 kb on - strand at 97.514 kb on - strand at 97.514 kb on - strand at 97.672 kb on + strand at 97.672 kb on + strand at 97.672 kb on + strand at 97.672 kb on + strand at 97.672 kb on + strand at 97.672 kb on + strand at 97.673 kb on - strand at 97.673 kb on - strand at 97.673 kb on - strand at 97.673 kb on - strand at 97.673 kb on - strand at 97.673 kb on - strand at 97.673 kb on - strand at 97.673 kb on - strand at 97.673 kb on - strand at 97.673 kb on - strand at 97.685 kb on + strand at 97.685 kb on + strand at 97.685 kb on + strand at 97.685 kb on + strand at 97.685 kb on + strand at 97.685 kb on + strand at 97.686 kb on - strand at 97.686 kb on - strand at 97.686 kb on - strand at 97.686 kb on - strand at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.932 kb on + strand, within MPMX19_00091 at 97.933 kb on - strand, within MPMX19_00091 at 97.933 kb on - strand, within MPMX19_00091 at 97.933 kb on - strand, within MPMX19_00091 at 97.933 kb on - strand, within MPMX19_00091 at 97.933 kb on - strand, within MPMX19_00091 at 97.933 kb on - strand, within MPMX19_00091 at 97.933 kb on - strand, within MPMX19_00091 at 97.933 kb on - strand, within MPMX19_00091 at 97.933 kb on - strand, within MPMX19_00091 at 97.933 kb on - strand, within MPMX19_00091 at 97.933 kb on - strand, within MPMX19_00091 at 97.933 kb on - strand, within MPMX19_00091 at 97.933 kb on - strand, within MPMX19_00091 at 97.933 kb on - strand, within MPMX19_00091 at 97.933 kb on - strand, within MPMX19_00091 at 97.934 kb on + strand, within MPMX19_00091 at 97.934 kb on + strand, within MPMX19_00091 at 97.934 kb on + strand, within MPMX19_00091 at 97.934 kb on + strand, within MPMX19_00091 at 97.934 kb on + strand, within MPMX19_00091 at 97.935 kb on - strand, within MPMX19_00091 at 97.935 kb on - strand, within MPMX19_00091 at 97.935 kb on - strand, within MPMX19_00091 at 97.935 kb on - strand, within MPMX19_00091 at 97.935 kb on - strand, within MPMX19_00091 at 98.401 kb on + strand at 98.401 kb on + strand at 98.401 kb on + strand at 98.401 kb on + strand at 98.402 kb on - strand at 98.417 kb on + strand at 98.417 kb on + strand at 98.418 kb on - strand at 98.419 kb on + strand at 98.419 kb on + strand at 98.419 kb on + strand at 98.420 kb on - strand at 98.460 kb on - strand at 100.296 kb on - strand at 100.296 kb on - strand at 100.296 kb on - strand at 100.296 kb on - strand at 100.353 kb on - strand at 100.649 kb on + strand at 100.649 kb on + strand at 100.649 kb on + strand at 100.649 kb on + strand at 100.649 kb on + strand at 100.650 kb on - strand at 100.650 kb on - strand at 100.650 kb on - strand at 100.650 kb on - strand at 100.650 kb on - strand at 100.650 kb on - strand at 100.650 kb on - strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.676 kb on + strand at 100.676 kb on + strand at 100.712 kb on + strand at 100.712 kb on + strand at 100.712 kb on + strand at 100.712 kb on + strand at 100.713 kb on - strand at 100.713 kb on - strand at 100.713 kb on - strand at 100.713 kb on - strand at 100.713 kb on - strand at 100.739 kb on + strand at 100.740 kb on - strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.760 kb on - strand at 100.760 kb on - strand at 101.258 kb on + strand, within MPMX19_00094 at 101.258 kb on + strand, within MPMX19_00094 at 101.259 kb on - strand, within MPMX19_00094
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; spin-x control remove 97,490 - MPMX19_00090 0.88 +0.6 97,490 - MPMX19_00090 0.88 +0.0 97,513 + -1.1 97,513 + -0.2 97,513 + -0.9 97,513 + -0.4 97,513 + -0.2 97,513 + +0.7 97,514 - -0.9 97,514 - -0.5 97,514 - -1.1 97,514 - +0.9 97,514 - -0.6 97,672 + +0.7 97,672 + +0.1 97,672 + +1.1 97,672 + +0.6 97,672 + -1.1 97,672 + +0.7 97,673 - +0.1 97,673 - -1.3 97,673 - +0.3 97,673 - -1.6 97,673 - -1.2 97,673 - +1.0 97,673 - +0.7 97,673 - -0.9 97,673 - -0.8 97,673 - +0.2 97,685 + +0.1 97,685 + -0.1 97,685 + -0.9 97,685 + -0.7 97,685 + -0.9 97,685 + -1.4 97,686 - -1.0 97,686 - +0.1 97,686 - +0.2 97,686 - +0.5 97,932 + MPMX19_00091 0.40 +0.4 97,932 + MPMX19_00091 0.40 +1.2 97,932 + MPMX19_00091 0.40 +0.4 97,932 + MPMX19_00091 0.40 +0.7 97,932 + MPMX19_00091 0.40 +1.5 97,932 + MPMX19_00091 0.40 -0.4 97,932 + MPMX19_00091 0.40 +0.8 97,932 + MPMX19_00091 0.40 -0.6 97,932 + MPMX19_00091 0.40 -0.9 97,932 + MPMX19_00091 0.40 -0.2 97,932 + MPMX19_00091 0.40 -1.1 97,932 + MPMX19_00091 0.40 +0.0 97,932 + MPMX19_00091 0.40 -1.0 97,932 + MPMX19_00091 0.40 -0.6 97,932 + MPMX19_00091 0.40 +0.3 97,932 + MPMX19_00091 0.40 -0.4 97,932 + MPMX19_00091 0.40 +0.3 97,932 + MPMX19_00091 0.40 -1.8 97,932 + MPMX19_00091 0.40 +1.8 97,932 + MPMX19_00091 0.40 -0.9 97,932 + MPMX19_00091 0.40 +0.5 97,932 + MPMX19_00091 0.40 +0.5 97,932 + MPMX19_00091 0.40 +0.6 97,932 + MPMX19_00091 0.40 +0.4 97,933 - MPMX19_00091 0.40 -0.5 97,933 - MPMX19_00091 0.40 +0.1 97,933 - MPMX19_00091 0.40 +0.7 97,933 - MPMX19_00091 0.40 -0.0 97,933 - MPMX19_00091 0.40 -1.3 97,933 - MPMX19_00091 0.40 -0.7 97,933 - MPMX19_00091 0.40 +0.6 97,933 - MPMX19_00091 0.40 -0.1 97,933 - MPMX19_00091 0.40 +0.1 97,933 - MPMX19_00091 0.40 +0.1 97,933 - MPMX19_00091 0.40 +0.4 97,933 - MPMX19_00091 0.40 -1.6 97,933 - MPMX19_00091 0.40 +0.9 97,933 - MPMX19_00091 0.40 -1.9 97,933 - MPMX19_00091 0.40 -0.3 97,934 + MPMX19_00091 0.41 +1.4 97,934 + MPMX19_00091 0.41 -0.6 97,934 + MPMX19_00091 0.41 -1.3 97,934 + MPMX19_00091 0.41 +0.1 97,934 + MPMX19_00091 0.41 -1.8 97,935 - MPMX19_00091 0.41 -1.6 97,935 - MPMX19_00091 0.41 +0.2 97,935 - MPMX19_00091 0.41 +0.7 97,935 - MPMX19_00091 0.41 +0.6 97,935 - MPMX19_00091 0.41 -1.2 98,401 + -0.2 98,401 + -2.1 98,401 + +1.1 98,401 + -2.1 98,402 - -0.7 98,417 + +0.9 98,417 + +0.6 98,418 - -0.2 98,419 + -1.1 98,419 + -0.9 98,419 + -0.3 98,420 - -0.1 98,460 - -1.4 100,296 - +0.3 100,296 - +0.3 100,296 - -0.4 100,296 - -2.9 100,353 - +0.0 100,649 + +0.6 100,649 + -2.2 100,649 + -0.8 100,649 + +0.2 100,649 + +0.1 100,650 - -1.2 100,650 - -0.6 100,650 - +0.7 100,650 - -1.1 100,650 - +0.4 100,650 - -0.1 100,650 - -0.4 100,654 + -1.5 100,654 + +0.5 100,654 + -0.2 100,654 + -0.6 100,654 + -0.8 100,654 + +0.6 100,654 + -1.8 100,654 + +0.1 100,654 + +0.0 100,654 + +0.8 100,654 + +2.1 100,654 + +0.2 100,654 + -1.6 100,654 + -0.3 100,654 + +0.5 100,654 + +1.4 100,654 + +0.1 100,654 + +0.3 100,654 + -0.5 100,655 - -0.6 100,655 - +0.4 100,655 - +0.1 100,655 - -0.5 100,655 - +0.8 100,655 - +0.5 100,655 - +0.7 100,655 - -0.1 100,655 - -0.6 100,655 - -0.9 100,655 - +0.5 100,655 - +0.6 100,655 - -1.2 100,655 - +0.0 100,655 - +0.7 100,655 - +0.1 100,655 - +0.6 100,655 - -0.1 100,655 - +0.3 100,655 - +0.6 100,676 + -0.8 100,676 + +0.2 100,712 + -0.4 100,712 + +1.4 100,712 + -1.8 100,712 + -0.1 100,713 - -2.2 100,713 - -0.5 100,713 - +1.4 100,713 - +1.1 100,713 - -0.6 100,739 + +0.5 100,740 - -0.6 100,759 + +0.5 100,759 + -1.6 100,759 + +0.5 100,759 + -0.9 100,759 + +1.4 100,759 + -1.4 100,759 + -0.6 100,759 + -1.0 100,759 + -0.6 100,759 + -0.8 100,759 + -0.1 100,759 + +1.2 100,760 - +0.5 100,760 - -2.1 101,258 + MPMX19_00094 0.52 -1.4 101,258 + MPMX19_00094 0.52 -0.7 101,259 - MPMX19_00094 0.52 -1.8
Or see this region's nucleotide sequence