Strain Fitness in Xanthobacter sp. DMC5 around GFF973

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF971 and GFF972 are separated by 10 nucleotidesGFF972 and GFF973 overlap by 4 nucleotidesGFF973 and GFF974 are separated by 31 nucleotidesGFF974 and GFF975 are separated by 3 nucleotides GFF971 - Heme exporter protein C, at 1,049,990 to 1,050,721 GFF971 GFF972 - hypothetical protein, at 1,050,732 to 1,050,902 GFF972 GFF973 - Thiol:disulfide interchange protein CycY, at 1,050,899 to 1,051,495 GFF973 GFF974 - putative adenylyltransferase/sulfurtransferase MoeZ, at 1,051,527 to 1,052,345 GFF974 GFF975 - hypothetical protein, at 1,052,349 to 1,053,308 GFF975 Position (kb) 1050 1051 1052Strain fitness (log2 ratio) -1 0 1at 1049.978 kb on + strandat 1049.978 kb on + strandat 1051.523 kb on - strandat 1052.325 kb on - strandat 1052.382 kb on + strandat 1052.383 kb on - strandat 1052.383 kb on - strandat 1052.384 kb on + strandat 1052.384 kb on + strandat 1052.384 kb on + strandat 1052.384 kb on + strandat 1052.384 kb on + strandat 1052.385 kb on - strandat 1052.385 kb on - strandat 1052.385 kb on - strandat 1052.385 kb on - strandat 1052.385 kb on - strandat 1052.385 kb on - strandat 1052.385 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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1,049,978 + +0.5
1,049,978 + -1.1
1,051,523 - -1.0
1,052,325 - +0.2
1,052,382 + +0.7
1,052,383 - +0.5
1,052,383 - +0.4
1,052,384 + +0.1
1,052,384 + +0.1
1,052,384 + +0.2
1,052,384 + +0.5
1,052,384 + +0.6
1,052,385 - +0.8
1,052,385 - +0.3
1,052,385 - +0.9
1,052,385 - -0.2
1,052,385 - -0.5
1,052,385 - +0.1
1,052,385 - +0.0

Or see this region's nucleotide sequence